HCSGD entry for LYSMD1
1. General information
| Official gene symbol | LYSMD1 |
|---|---|
| Entrez ID | 388695 |
| Gene full name | LysM, putative peptidoglycan-binding, domain containing 1 |
| Other gene symbols | RP11-68I18.5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0016998 | Cell wall macromolecule catabolic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3762102694 | 0.2009031382 | 0.9999902473 | 0.8667384855 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0277651229 |
| GSE13712_SHEAR | Down | -0.2419734323 |
| GSE13712_STATIC | Down | -0.6923978536 |
| GSE19018 | Up | 0.1181859290 |
| GSE19899_A1 | Up | 0.0458369051 |
| GSE19899_A2 | Up | 0.2743517595 |
| PubMed_21979375_A1 | Up | 0.4521250554 |
| PubMed_21979375_A2 | Up | 0.3154900834 |
| GSE35957 | Down | -0.2909483170 |
| GSE36640 | Up | 0.6064759459 |
| GSE54402 | Down | -0.1612104967 |
| GSE9593 | Down | -0.1876748181 |
| GSE43922 | Up | 0.3701261383 |
| GSE24585 | Up | 0.1175068480 |
| GSE37065 | Down | -0.1215380239 |
| GSE28863_A1 | Down | -0.1859493573 |
| GSE28863_A2 | Down | -0.2812496195 |
| GSE28863_A3 | Down | -0.3125774788 |
| GSE28863_A4 | Down | -0.2599197849 |
| GSE48662 | Up | 0.2745507300 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019386 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT024173 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT025999 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
