HCSGD entry for ARCN1
1. General information
| Official gene symbol | ARCN1 |
|---|---|
| Entrez ID | 372 |
| Gene full name | archain 1 |
| Other gene symbols | COPD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0006890 | Retrograde vesicle-mediated transport, Golgi to ER | IEA TAS | biological_process |
| GO:0008344 | Adult locomotory behavior | IEA | biological_process |
| GO:0021691 | Cerebellar Purkinje cell layer maturation | IEA | biological_process |
| GO:0030126 | COPI vesicle coat | IEA ISS | cellular_component |
| GO:0030131 | Clathrin adaptor complex | IEA | cellular_component |
| GO:0043473 | Pigmentation | IEA | biological_process |
| GO:0048205 | COPI coating of Golgi vesicle | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1269410965 | 0.9607836214 | 0.7256204733 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0553164762 |
| GSE13712_SHEAR | Down | -0.1093639003 |
| GSE13712_STATIC | Down | -0.1259935742 |
| GSE19018 | Down | -0.3627691170 |
| GSE19899_A1 | Up | 0.2616527518 |
| GSE19899_A2 | Up | 0.2743045559 |
| PubMed_21979375_A1 | Up | 0.7581206409 |
| PubMed_21979375_A2 | Up | 0.3264010473 |
| GSE35957 | Down | -0.0071934871 |
| GSE36640 | Up | 0.1578956501 |
| GSE54402 | Up | 0.2112474634 |
| GSE9593 | Down | -0.0233196193 |
| GSE43922 | Up | 0.0838551631 |
| GSE24585 | Up | 0.1837808478 |
| GSE37065 | Up | 0.0038363301 |
| GSE28863_A1 | Up | 0.2413899919 |
| GSE28863_A2 | Up | 0.3874114831 |
| GSE28863_A3 | Down | -0.1778196694 |
| GSE28863_A4 | Up | 0.1628726968 |
| GSE48662 | Up | 0.1315983351 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT002752 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-1 | MIMAT0000416 | MIRT002752 | pSILAC//Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1 | MIMAT0000416 | MIRT002752 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-361-5p | MIMAT0000703 | MIRT020101 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020180 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027428 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028062 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032273 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039464 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041387 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047986 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049588 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-26a-5p | MIMAT0000082 | MIRT050060 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051483 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
