HCSGD entry for COL28A1
1. General information
| Official gene symbol | COL28A1 |
|---|---|
| Entrez ID | 340267 |
| Gene full name | collagen, type XXVIII, alpha 1 |
| Other gene symbols | COL28 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004867 | Serine-type endopeptidase inhibitor activity | IEA | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005604 | Basement membrane | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4593524106 | 0.9276999734 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1649338284 |
| GSE13712_SHEAR | Up | 0.0006557380 |
| GSE13712_STATIC | Up | 0.0158618388 |
| GSE19018 | Up | 0.1282669451 |
| GSE19899_A1 | Up | 0.1190467377 |
| GSE19899_A2 | Down | -0.0246032048 |
| PubMed_21979375_A1 | Up | 0.2080916663 |
| PubMed_21979375_A2 | Up | 0.0680307923 |
| GSE35957 | Up | 0.1138778077 |
| GSE36640 | Up | 0.0125180840 |
| GSE54402 | Up | 0.3156085410 |
| GSE9593 | Down | -0.3148104342 |
| GSE43922 | Up | 0.0135178043 |
| GSE24585 | Up | 0.0243271251 |
| GSE37065 | Down | -0.0116171071 |
| GSE28863_A1 | Down | -0.0198412063 |
| GSE28863_A2 | Up | 0.0639179345 |
| GSE28863_A3 | Up | 0.2159522488 |
| GSE28863_A4 | Up | 0.0355180244 |
| GSE48662 | Down | -0.0057198062 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
