HCSGD entry for HOXD13
1. General information
| Official gene symbol | HOXD13 |
|---|---|
| Entrez ID | 3239 |
| Gene full name | homeobox D13 |
| Other gene symbols | BDE BDSD HOX4I SPD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | IEA | biological_process |
| GO:0003677 | DNA binding | TAS | molecular_function |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | TAS | biological_process |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0007275 | Multicellular organismal development | TAS | biological_process |
| GO:0009952 | Anterior/posterior pattern specification | IEA | biological_process |
| GO:0030539 | Male genitalia development | IEA | biological_process |
| GO:0042127 | Regulation of cell proliferation | IEA | biological_process |
| GO:0042733 | Embryonic digit morphogenesis | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0048619 | Embryonic hindgut morphogenesis | IEA | biological_process |
| GO:0060527 | Prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis | IEA | biological_process |
| GO:0060571 | Morphogenesis of an epithelial fold | IEA | biological_process |
| GO:0060602 | Branch elongation of an epithelium | IEA | biological_process |
| GO:0060687 | Regulation of branching involved in prostate gland morphogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2908862201 | 0.8842943049 | 0.9898496705 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0225481839 |
| GSE13712_SHEAR | Down | -0.1797722180 |
| GSE13712_STATIC | Down | -0.0718482508 |
| GSE19018 | Up | 0.0661949451 |
| GSE19899_A1 | Down | -0.0266621966 |
| GSE19899_A2 | Up | 0.2230532748 |
| PubMed_21979375_A1 | Up | 0.1473990132 |
| PubMed_21979375_A2 | Up | 0.0455716488 |
| GSE35957 | Up | 0.0280663758 |
| GSE36640 | Up | 0.0371307290 |
| GSE54402 | Up | 0.0186023335 |
| GSE9593 | Down | -0.0023906322 |
| GSE43922 | Up | 0.0520260545 |
| GSE24585 | Up | 1.4187065328 |
| GSE37065 | Down | -0.0998170102 |
| GSE28863_A1 | Down | -0.1455743744 |
| GSE28863_A2 | Down | -0.0671594310 |
| GSE28863_A3 | Up | 0.3868017133 |
| GSE28863_A4 | Up | 0.1126356305 |
| GSE48662 | Down | -0.0555737009 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027146 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042641 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045586 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047651 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051222 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1260b | MIMAT0015041 | MIRT052694 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
