HCSGD entry for HOXC6
1. General information
| Official gene symbol | HOXC6 |
|---|---|
| Entrez ID | 3223 |
| Gene full name | homeobox C6 |
| Other gene symbols | CP25 HHO.C8 HOX3 HOX3C |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0003714 | Transcription corepressor activity | TAS | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0007275 | Multicellular organismal development | TAS | biological_process |
| GO:0009952 | Anterior/posterior pattern specification | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0048706 | Embryonic skeletal system development | IEA | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9465674556 | 0.0201606930 | 0.9999902473 | 0.2750905132 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4334325868 |
| GSE13712_SHEAR | Down | -1.1840754461 |
| GSE13712_STATIC | Down | -0.2080930365 |
| GSE19018 | Down | -0.1570680952 |
| GSE19899_A1 | Down | -0.2093531961 |
| GSE19899_A2 | Up | 0.0250192578 |
| PubMed_21979375_A1 | Down | -0.4314679164 |
| PubMed_21979375_A2 | Up | 0.0093072367 |
| GSE35957 | Down | -0.5634621605 |
| GSE36640 | Down | -1.1816508028 |
| GSE54402 | Down | -0.2836318665 |
| GSE9593 | Down | -0.1573462198 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.4044842670 |
| GSE28863_A2 | Down | -0.2482503636 |
| GSE28863_A3 | Down | -0.0232368370 |
| GSE28863_A4 | Down | -0.1669346266 |
| GSE48662 | Up | 0.2566434088 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017144 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT021916 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-27a-3p | MIMAT0000084 | MIRT028721 | Sequencing | Functional MTI (Weak) | 20371350 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
