HCSGD entry for HOXC5

1. General information

Official gene symbolHOXC5
Entrez ID3222
Gene full namehomeobox C5
Other gene symbolsCP11 HOX3 HOX3D
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0003700Sequence-specific DNA binding transcription factor activityIEAmolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005730NucleolusIDAcellular_component
GO:0006351Transcription, DNA-templatedIEAbiological_process
GO:0006357Regulation of transcription from RNA polymerase II promoterTASbiological_process
GO:0009952Anterior/posterior pattern specificationIEAbiological_process
GO:0030054Cell junctionIDAcellular_component
GO:0043565Sequence-specific DNA bindingIEAmolecular_function
GO:0048706Embryonic skeletal system developmentIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.24297854180.87173384370.93011026761.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0709962147
GSE13712_SHEARUp0.0697907346
GSE13712_STATICDown-0.2020912188
GSE19018Up0.1318743105
GSE19899_A1Up0.0870802577
GSE19899_A2Up0.0124268371
PubMed_21979375_A1Up0.0115695508
PubMed_21979375_A2Up0.2301128307
GSE35957Up0.2689676686
GSE36640Down-0.0807405767
GSE54402Up0.0148187115
GSE9593Down-0.1744595903
GSE43922Up0.0221600278
GSE24585Up1.2152541017
GSE37065Down-0.0870653797
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Up0.1154003368

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.