HCSGD entry for HOXB9
1. General information
| Official gene symbol | HOXB9 |
|---|---|
| Entrez ID | 3219 |
| Gene full name | homeobox B9 |
| Other gene symbols | HOX-2.5 HOX2 HOX2E |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0009952 | Anterior/posterior pattern specification | IEA | biological_process |
| GO:0030879 | Mammary gland development | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0048706 | Embryonic skeletal system development | IEA | biological_process |
| GO:0060070 | Canonical Wnt signaling pathway | IMP | biological_process |
| GO:0060326 | Cell chemotaxis | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0379564454 | 0.9755289389 | 0.4401108370 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0203053800 |
| GSE13712_SHEAR | Up | 0.1942229994 |
| GSE13712_STATIC | Up | 0.2408472733 |
| GSE19018 | Up | 0.0668865445 |
| GSE19899_A1 | Up | 0.0129902651 |
| GSE19899_A2 | Up | 0.2105905064 |
| PubMed_21979375_A1 | Up | 0.3285836446 |
| PubMed_21979375_A2 | Down | -0.0124656705 |
| GSE35957 | Up | 0.1152995313 |
| GSE36640 | Up | 0.0365645267 |
| GSE54402 | Up | 0.2233648942 |
| GSE9593 | Down | -0.0286368561 |
| GSE43922 | Up | 0.1277256371 |
| GSE24585 | Up | 1.3790644110 |
| GSE37065 | Down | -0.0924084060 |
| GSE28863_A1 | Down | -0.1276336896 |
| GSE28863_A2 | Up | 0.5406611995 |
| GSE28863_A3 | Up | 0.5240579914 |
| GSE28863_A4 | Up | 0.1036398487 |
| GSE48662 | Up | 0.3020913948 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024768 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026516 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
