HCSGD entry for HOXA13
1. General information
| Official gene symbol | HOXA13 |
|---|---|
| Entrez ID | 3209 |
| Gene full name | homeobox A13 |
| Other gene symbols | HOX1 HOX1J |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | TAS | biological_process |
| GO:0001570 | Vasculogenesis | IEA | biological_process |
| GO:0001886 | Endothelial cell morphogenesis | IEA | biological_process |
| GO:0001894 | Tissue homeostasis | IEA | biological_process |
| GO:0003281 | Ventricular septum development | IEA | biological_process |
| GO:0003677 | DNA binding | TAS | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0030510 | Regulation of BMP signaling pathway | IEA | biological_process |
| GO:0030539 | Male genitalia development | IEA | biological_process |
| GO:0035115 | Embryonic forelimb morphogenesis | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0044212 | Transcription regulatory region DNA binding | IEA | molecular_function |
| GO:0045840 | Positive regulation of mitosis | IEA | biological_process |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0048839 | Inner ear development | IEA | biological_process |
| GO:0048844 | Artery morphogenesis | IEA | biological_process |
| GO:0060442 | Branching involved in prostate gland morphogenesis | IEA | biological_process |
| GO:0060847 | Endothelial cell fate specification | IEA | biological_process |
| GO:2001055 | Positive regulation of mesenchymal cell apoptotic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5689123324 | 0.7125702785 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0033150413 |
| GSE13712_SHEAR | Down | -0.0587354416 |
| GSE13712_STATIC | Down | -0.0411143612 |
| GSE19018 | Up | 0.0322489465 |
| GSE19899_A1 | Up | 0.0923479879 |
| GSE19899_A2 | Up | 0.0254597735 |
| PubMed_21979375_A1 | Down | -0.0708379897 |
| PubMed_21979375_A2 | Up | 0.0149250092 |
| GSE35957 | Down | -0.4774355728 |
| GSE36640 | Down | -0.0616965456 |
| GSE54402 | Down | -0.0055879148 |
| GSE9593 | Down | -0.0050209777 |
| GSE43922 | Up | 0.1334237475 |
| GSE24585 | Up | 0.5948395205 |
| GSE37065 | Down | -0.1637927059 |
| GSE28863_A1 | Up | 0.0513922819 |
| GSE28863_A2 | Up | 0.3830722561 |
| GSE28863_A3 | Down | -0.0480915896 |
| GSE28863_A4 | Down | -0.0483009241 |
| GSE48662 | Down | -0.0579805460 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-142-3p | MIMAT0000434 | MIRT021544 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024658 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026124 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-760 | MIMAT0004957 | MIRT036765 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT045907 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046676 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
