HCSGD entry for APOF
1. General information
| Official gene symbol | APOF |
|---|---|
| Entrez ID | 319 |
| Gene full name | apolipoprotein F |
| Other gene symbols | Apo-F LTIP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005102 | Receptor binding | TAS | molecular_function |
| GO:0005319 | Lipid transporter activity | TAS | molecular_function |
| GO:0005576 | Extracellular region | NAS | cellular_component |
| GO:0006629 | Lipid metabolic process | TAS | biological_process |
| GO:0006641 | Triglyceride metabolic process | IEA | biological_process |
| GO:0006869 | Lipid transport | TAS | biological_process |
| GO:0008203 | Cholesterol metabolic process | IEA | biological_process |
| GO:0015485 | Cholesterol binding | TAS | molecular_function |
| GO:0033344 | Cholesterol efflux | IEA | biological_process |
| GO:0034362 | Low-density lipoprotein particle | IEA | cellular_component |
| GO:0034364 | High-density lipoprotein particle | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6511284716 | 0.5786170282 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1216872851 |
| GSE13712_SHEAR | Up | 0.0636770742 |
| GSE13712_STATIC | Up | 0.2866114631 |
| GSE19018 | Up | 0.1011662683 |
| GSE19899_A1 | Down | -0.2886289777 |
| GSE19899_A2 | Up | 0.0907077703 |
| PubMed_21979375_A1 | Down | -0.1843134694 |
| PubMed_21979375_A2 | Up | 0.0603393778 |
| GSE35957 | Up | 0.1674517525 |
| GSE36640 | Up | 0.1010849256 |
| GSE54402 | Down | -0.1504132180 |
| GSE9593 | Up | 0.0120075453 |
| GSE43922 | Up | 0.0189239665 |
| GSE24585 | Up | 0.2477368135 |
| GSE37065 | Up | 0.0796793674 |
| GSE28863_A1 | Down | -0.0939441193 |
| GSE28863_A2 | Down | -0.2901495698 |
| GSE28863_A3 | Down | -0.0275885191 |
| GSE28863_A4 | Up | 0.0797825067 |
| GSE48662 | Down | -0.0134091213 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030053 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043031 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
