HCSGD entry for HIF1A


1. General information

Official gene symbolHIF1A
Entrez ID3091
Gene full namehypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
Other gene symbolsHIF-1A HIF-1alpha HIF1 HIF1-ALPHA MOP1 PASD8 bHLHe78
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000989Transcription factor binding transcription factor activityIDAmolecular_function
GO:0001076RNA polymerase II transcription factor binding transcription factor activityIEAmolecular_function
GO:0001077RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcriptionIEAmolecular_function
GO:0001525AngiogenesisIEAbiological_process
GO:0001666Response to hypoxiaIDA IMPbiological_process
GO:0001755Neural crest cell migrationIEAbiological_process
GO:0001837Epithelial to mesenchymal transitionIEA ISSbiological_process
GO:0001892Embryonic placenta developmentIEAbiological_process
GO:0001922B-1 B cell homeostasisIEAbiological_process
GO:0001938Positive regulation of endothelial cell proliferationICbiological_process
GO:0001947Heart loopingIEAbiological_process
GO:0002052Positive regulation of neuroblast proliferationIEAbiological_process
GO:0002248Connective tissue replacement involved in inflammatory response wound healingIEA ISSbiological_process
GO:0003151Outflow tract morphogenesisIEAbiological_process
GO:0003208Cardiac ventricle morphogenesisIEAbiological_process
GO:0003677DNA bindingIEAmolecular_function
GO:0003700Sequence-specific DNA binding transcription factor activityIDA IEA TASmolecular_function
GO:0003705RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activityIDAmolecular_function
GO:0004871Signal transducer activityIEAmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0005667Transcription factor complexIPIcellular_component
GO:0005730NucleolusIDAcellular_component
GO:0005737CytoplasmIDAcellular_component
GO:0005829CytosolTAScellular_component
GO:0006089Lactate metabolic processIEAbiological_process
GO:0006110Regulation of glycolysisIEAbiological_process
GO:0006351Transcription, DNA-templatedIEAbiological_process
GO:0006355Regulation of transcription, DNA-templatedIDAbiological_process
GO:0006879Cellular iron ion homeostasisIEAbiological_process
GO:0007165Signal transductionIMPbiological_process
GO:0007219Notch signaling pathwayTASbiological_process
GO:0007595LactationIEAbiological_process
GO:0008134Transcription factor bindingIPImolecular_function
GO:0008542Visual learningIEAbiological_process
GO:0010468Regulation of gene expressionIDAbiological_process
GO:0010573Vascular endothelial growth factor productionIDAbiological_process
GO:0010575Positive regulation vascular endothelial growth factor productionIDAbiological_process
GO:0010634Positive regulation of epithelial cell migrationIEA ISSbiological_process
GO:0010870Positive regulation of receptor biosynthetic processIMPbiological_process
GO:0014850Response to muscle activityIEAbiological_process
GO:0019896Axon transport of mitochondrionIMPbiological_process
GO:0019899Enzyme bindingIPImolecular_function
GO:0019901Protein kinase bindingIPImolecular_function
GO:0021502Neural fold elevation formationIEAbiological_process
GO:0021987Cerebral cortex developmentIEAbiological_process
GO:0030502Negative regulation of bone mineralizationIEAbiological_process
GO:0030949Positive regulation of vascular endothelial growth factor receptor signaling pathwayIC IEAbiological_process
GO:0031514Motile ciliumIEAcellular_component
GO:0031625Ubiquitin protein ligase bindingIPImolecular_function
GO:0032007Negative regulation of TOR signalingIEAbiological_process
GO:0032364Oxygen homeostasisIDA IEAbiological_process
GO:0032722Positive regulation of chemokine productionTASbiological_process
GO:0032909Regulation of transforming growth factor beta2 productionIMPbiological_process
GO:0032963Collagen metabolic processIEA ISSbiological_process
GO:0035035Histone acetyltransferase bindingIPImolecular_function
GO:0035162Embryonic hemopoiesisIEAbiological_process
GO:0035774Positive regulation of insulin secretion involved in cellular response to glucose stimulusIEAbiological_process
GO:0042541Hemoglobin biosynthetic processIEAbiological_process
GO:0042593Glucose homeostasisIEAbiological_process
GO:0042789MRNA transcription from RNA polymerase II promoterICbiological_process
GO:0042826Histone deacetylase bindingIEAmolecular_function
GO:0043524Negative regulation of neuron apoptotic processIEAbiological_process
GO:0043565Sequence-specific DNA bindingIDA IEAmolecular_function
GO:0043619Regulation of transcription from RNA polymerase II promoter in response to oxidative stressIDA IEAbiological_process
GO:0044212Transcription regulatory region DNA bindingIDAmolecular_function
GO:0045648Positive regulation of erythrocyte differentiationIC IEAbiological_process
GO:0045766Positive regulation of angiogenesisICbiological_process
GO:0045821Positive regulation of glycolysisICbiological_process
GO:0045893Positive regulation of transcription, DNA-templatedIDA IMPbiological_process
GO:0045926Negative regulation of growthIEAbiological_process
GO:0045944Positive regulation of transcription from RNA polymerase II promoterIDA IGIbiological_process
GO:0046716Muscle cell cellular homeostasisIEAbiological_process
GO:0046886Positive regulation of hormone biosynthetic processIDAbiological_process
GO:0046982Protein heterodimerization activityIPI TASmolecular_function
GO:0046983Protein dimerization activityIEAmolecular_function
GO:0048546Digestive tract morphogenesisIEAbiological_process
GO:0050790Regulation of catalytic activityIEAbiological_process
GO:0051000Positive regulation of nitric-oxide synthase activityTASbiological_process
GO:0051216Cartilage developmentIEAbiological_process
GO:0051541Elastin metabolic processIEA ISSbiological_process
GO:0051879Hsp90 protein bindingIDAmolecular_function
GO:0060574Intestinal epithelial cell maturationIEAbiological_process
GO:0061030Epithelial cell differentiation involved in mammary gland alveolus developmentIEAbiological_process
GO:0061298Retina vasculature development in camera-type eyeIEAbiological_process
GO:0061418Regulation of transcription from RNA polymerase II promoter in response to hypoxiaTASbiological_process
GO:0061419Positive regulation of transcription from RNA polymerase II promoter in response to hypoxiaIDA IMPbiological_process
GO:0070101Positive regulation of chemokine-mediated signaling pathwayICbiological_process
GO:0070244Negative regulation of thymocyte apoptotic processIEAbiological_process
GO:0071347Cellular response to interleukin-1IEPbiological_process
GO:0071456Cellular response to hypoxiaIDA IEP TASbiological_process
GO:0071542Dopaminergic neuron differentiationIEAbiological_process
GO:2001054Negative regulation of mesenchymal cell apoptotic processIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.35347474640.65464126360.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0084956262
GSE13712_SHEARDown-0.1586201914
GSE13712_STATICDown-0.0736843088
GSE19018Up0.0933542981
GSE19899_A1Up0.0591681839
GSE19899_A2Up0.1416964477
PubMed_21979375_A1Up0.5401483129
PubMed_21979375_A2Up0.2853253980
GSE35957Up0.2672988492
GSE36640Up0.1753180833
GSE54402Up0.1631580091
GSE9593Down-0.1302615909
GSE43922Up0.2146746579
GSE24585Up0.3598319829
GSE37065Up0.0502933194
GSE28863_A1Down-0.1686900717
GSE28863_A2Up0.1059855868
GSE28863_A3Down-0.2251638343
GSE28863_A4Down-0.0854971705
GSE48662Down-0.9097903058

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Name

Drug

Accession number

CarvedilolDB01136 APRD00091
2-MethoxyestradiolDB02342 EXPT01362
N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINEDB08687 -

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-20a-5pMIMAT0000075MIRT000002Luciferase reporter assay//Western blot//Northern blot//qRT-PCRFunctional MTI18632605
hsa-miR-519c-3pMIMAT0002832MIRT000496Luciferase reporter assay//qRT-PCR//Western blotFunctional MTI20233879
hsa-miR-20b-5pMIMAT0001413MIRT000498qRT-PCR//ELISA//ChIP//Western blotFunctional MTI20232316
hsa-miR-107MIMAT0000104MIRT004487qRT-PCR//Luciferase reporter assay//Western blot//Northern blotFunctional MTI20308559
hsa-miR-18a-5pMIMAT0000072MIRT004587SequencingFunctional MTI (Weak)20371350
hsa-miR-424-5pMIMAT0001341MIRT005926ChIP-seq//Luciferase reporter assay//Microarray//qRT-PCR//Western blotFunctional MTI20972335
hsa-miR-138-5pMIMAT0000430MIRT006744Luciferase reporter assayFunctional MTI23389731
hsa-miR-199b-5pMIMAT0000263MIRT007022Luciferase reporter assayFunctional MTI21557766
hsa-miR-33a-5pMIMAT0000091MIRT028216SequencingFunctional MTI (Weak)20371350
hsa-miR-106b-3pMIMAT0004672MIRT038587CLASHFunctional MTI (Weak)23622248
hsa-let-7b-5pMIMAT0000063MIRT051936CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: 22 abstracts the gene occurs.


PubMed ID of the article

Sentenece the gene occurs

27114850Hypoxia stabilizes the expression of hypoxia-inducible transcription factor-1alpha (HIF-1alpha), which controls the expression of hundreds of survival genes related to e
27114850Moreover, many stress-related signaling mechanisms, such as oxidative stress and energy metabolic disturbances, as well as the signaling cascades via ceramide, mTOR, NF-kappaB, and TGF-beta pathways, can also induce the expression of HIF-1alpha protein to facilitate cell survival in normoxia
27114850Screening studies have indicated that the stabilization of HIF-1alpha increases the expression of distinct histone lysine demethylases (KDM)
27114850HIF-1alpha stimulates the expression of KDM3A, KDM4B, KDM4C, and KDM6B, which enhance gene transcription by demethylating H3K9 and H3K27 sites (repressive epigenetic marks)
27114850In addition, HIF-1alpha induces the expression of KDM2B and KDM5B, which repress transcription by demethylating H3K4me2,3 sites (activating marks)
27114850Hypoxia-inducible KDMs support locally the gene transcription induced by HIF-1alpha, although they can also control genome-wide chromatin landscape, especially KDMs which demethylate H3K9 and H3K27 sites
27114850A chronic stimulation of HIF-1alpha can provoke tissue fibrosis and cellular senescence, which both are increasingly present with aging and age-related diseases
26923269Over the last decade, extensive studies have demonstrated that SIRT1 can activate several transcriptional factors, such as peroxisome proliferator activated receptor gamma co-activator 1alpha (PGC-1alpha) and hypoxia-inducible factor 1alpha (HIF-1alpha) resulting in ameliorated mitochondria biogenesis and extended life span
26873092We found that circ-Foxo3 was mainly distributed in the cytoplasm, where it interacted with the anti-senescent protein ID-1 and the transcription factor E2F1, as well as the anti-stress proteins FAK and HIF1alpha
26873092CONCLUSION: We conclude that ID-1, E2F1, FAK, and HIF1alpha interact with circ-Foxo3 and are retained in the cytoplasm and could no longer exert their anti-senescent and anti-stress roles, resulting in increased cellular senescence
26827661Thus, we hypothesized that overexpression of Hif-1alpha may improve the vasculogenesis-related phenotype of pbEPCs
26827661In the present study, we overexpressed Hif-1alpha in pbEPCs and cbEPCs by using recombinant adenoviruses and investigated effects on stem cell- and vasculogenesis-related cell parameters
26827661Overexpression of Hif-1alpha enhanced proliferation, invasion, cell survival and in vitro capillary sprout formation of both EPC populations
26827661Migration was increased in cbEPCs upon Hif-1alpha overexpression, but not in pbEPCs
26827661Similarly, the colony-formation capacity was much higher in cbEPCs in comparison to pbEPCs and was further increased by Hif-1alpha overexpression, whereas Hif-1alpha transduction exerted no significant influence on colony formation of pbEPCs
26827661In summary, our experiments illustrated multifarious effects of Hif-1alpha overexpression on stem cell and vasculogenic parameters
26827661Therefore, Hif-1alpha overexpression may represent a therapeutic option to improve cellular functions of adult as well as postnatal EPCs
26826302Loss of function study using SENP1 siRNA was performed to investigate the regulatory role of sumoylation on the function of hypoxia inducible factor 1alpha (HIF-1alpha) and the hypoxic tolerance of IVD cells
26826302Although downregulation of SENP1 decreased the transcriptional activity of HIF-1alpha, the viability of disc cells showed no significant loss under hypoxia
26057707Expression of the hypoxia inducible factors HIF1-alpha (HIF1A gene) and HIF2-alpha (EPAS1 gene) and/or hypoxia-regulated pathways has been shown to promote the undifferentiated phenotype of NBL cells
26057707Our hypothesis is that HIF1A and EPAS1 expression represent one of the mechanisms responsible for the lack of responsiveness of NBL to differentiation therapy
26057707Clinically, high levels of HIF1A and EPAS1 expression were associated with inferior survival in two NBL microarray datasets, and patient subgroups with lower expression of HIF1A and EPAS1 showed significant enrichment of pathways related to neuronal differentiation
26057707In NBL cell lines, the combination of all-trans retinoic acid (ATRA) with HIF1A or EPAS1 silencing led to an acquired glial-cell phenotype and enhanced expression of glial-cell differentiation markers
26057707Furthermore, HIF1A or EPAS1 silencing might promote cell senescence independent of ATRA treatment
25699017These gene products include mTOR, IKK-beta/NF-kappaB complex, and HIF-1alpha, an important cellular survival signal
25699017One of the actions of succinate is to stabilize the hypoxia and cellular stress conditions by inducing the transcriptional regulator HIF-1alpha
25077541We demonstrate that miR-17 targets both ADCY5 and IRS1, upregulating the downstream signals MKP7, FoxO3, LC3B, and HIF1alpha, and downregulating mTOR, c-myc, cyclin D1, and JNK
25077541Repression of ADCY5 by miR-17 translocated membrane-bound RGS2 into the nucleus, promoting interactions of RGS2 with HIF1alpha and the MKP7 promoter, enhancing MKP7 transcription
24729935Studies have identified alterations in the level or activity of factors such as SIRT1, PGC-1alpha, HIF-1alpha and c-MYC involved in key regulatory processes in the maintenance of mitochondrial structural integrity, biogenesis and function
23764844Gamma rays induce a p53-independent mitochondrial biogenesis that is counter-regulated by HIF1alpha
23764844Although the main effector of the response to gamma-rays is the p53-p21 axis, we demonstrated that mitochondrial biogenesis is only indirectly regulated by p53, whose activation triggers a murine double minute 2 (MDM2)-mediated hypoxia-inducible factor 1alpha (HIF1alpha) degradation, leading to the release of peroxisome-proliferator activated receptor gamma co-activator 1beta inhibition by HIF1alpha, thus promoting mitochondrial biogenesis
23764844Mimicking hypoxia by HIF1alpha stabilization, in fact, blunts the mitochondrial response to gamma-rays as well as the induction of p21-mediated cell senescence, indicating prevalence of the hypoxic over the genotoxic response
23764844Finally, we also show in vivo that post-radiotherapy mitochondrial DNA copy number increase well correlates with lack of HIF1alpha increase in the tissue, concluding this may be a useful molecular tool to infer the trigger of a hypoxic response during radiotherapy, which may lead to failure of activation of cell senescence
23119050We have also assessed HIF-1alpha, p38-MAPK and CD36 immunostaining in the mucosa of patients with inflammatory bowel disease
23119050Addition of a p38-MAPK inhibitor significantly reduced the increase in CD36 and TSP-1 expression provoked by hypoxia and decreased HIF-1alpha stabilization in macrophages
23119050Immunohistochemical studies revealed CD36, HIF-1alpha and p38-MAPK expression in the mucosa of patients with inflammatory bowel disease
23119050A positive and significant correlation between HIF-1alpha and CD36 expression and CD36 and p38-MAPK expression was observed in cells of the lamina propria of the damaged mucosa
22847439Suppression of geroconversion was p53- and HIF-1-independent, as hypoxia also suppressed geroconversion in cells lacking functional p53 and HIF-1alpha
22130126BACKGROUND: Tumor hypoxia is a common feature of prostate tumors associated with the stabilization of hypoxia-inducible-factor 1alpha (HIF-1alpha) and poor prognosis following radiation therapy
22130126These modified cellular responses appeared mediated by HIF-1alpha
21746877Cyclin E-induced morphogenesis arrest is dependent upon hypoxia-inducible factor 1alpha (HIF-1alpha), which itself is induced by high cyclin E both in cultured mammary acini and in mammary epithelial tissues in a mouse model of deregulated cyclin E expression
21746877We next determined that E2F activity directly regulates and is required for induction of HIF1A by cyclin E
21746877Additionally, we found that cyclin E deregulation in mammary acini decreases, in an E2F-independent manner, expression of the EGLN1 prolyl hydroxylase that regulates HIF-1alpha degradation within the VHL ubiquitin ligase pathway
21286718The combination could also inhibit the expression of Cyclin D1 and phosphorylated mTOR while had no impact on p53, p16, PTEN, and HIF-1alpha
21239881We have recently shown that the oxygen dependent transcription factor hypoxia inducible factor 1alpha (Hif1alpha) is essential for maintenance of functional levels of telomerase in murine embryonic stem cells (mES)
21239881Importantly, long-term proliferation of mES cells with reduced Hif1alpha levels led to telomere shortening and ultimately cell senescence
19584087In association with these phenotypic changes and the absence of HIF-1 alpha protein expression, we have demonstrated significant increases in global levels of DNA methylation and H3K9 histone acetylation in these cells, concomitant with the increased expression of DNA methyltransferase DMNT3b and gene-specific changes in DNA methylation at key imprinting loci
17998063Increasingly clear is an important regulatory role for hypoxia-inducible factor 1alpha (HIF-1alpha) in the expression of the cytokine/growth factor macrophage migration inhibitory factor (MIF)
17998063The functional significance of hypoxia-induced MIF expression is revealed by findings demonstrating that HIF-1alpha-dependent MIF expression is necessary for hypoxia-induced evasion from cell senescence and that MIF is necessary for HIF-1alpha stabilization induced by hypoxia and prolyl hydroxylase (PHD) inhibitors
17142669HIF1alpha delays premature senescence through the activation of MIF
17142669We have investigated the role of the hypoxia-inducible factor 1alpha (HIF1alpha) transcription factor in preventing senescence in aerobic and hypoxic conditions
17142669Using embryonic fibroblasts from a conditional HIF1alpha knockout mouse, we found that loss of HIF1alpha under aerobic conditions significantly accelerated the onset of cellular senescence, and decreased proliferation under hypoxia
17142669Furthermore, we identify the macrophage migration inhibitory factor (MIF) as a crucial effector of HIF1alpha that delays senescence
17142669Inhibition of MIF phenocopies loss of HIF1alpha
17142669Our findings highlight a novel role for HIF1alpha under aerobic conditions, and identify MIF as a target responsible for this function
16915281PML inhibits HIF-1alpha translation and neoangiogenesis through repression of mTOR
16915281We demonstrate that in hypoxic conditions PML acts as a negative regulator of the synthesis rate of hypoxia-inducible factor 1alpha (HIF-1alpha) by repressing mammalian target of rapamycin (mTOR)
16827160The data demonstrated that, in all cell types assayed, either hypoxia or CoCl2 induced the main regulator of transcriptional responses to reduced oxygen tension, namely the hypoxia inducible factor-1alpha (HIF-1alpha), in a dose- and time-dependent manner
16827160In the immortalized HDFs, the transcriptional activity of HIF-1alpha was also evident by the accumulation of its main downstream gene targets, namely erythropoietin (EPO) and the vascular endothelial growth factor (VEGF)
16827160Interestingly, the immortalized HDFs were found to exhibit higher HIF-1alpha endogenous levels and induction, following cell exposure to hypoxic conditions, as compared to either young or senescent cells
16161047Induction of human endometrial cancer cell senescence through modulation of HIF-1alpha activity by EGLN1
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