HCSGD entry for VSX1
1. General information
| Official gene symbol | VSX1 |
|---|---|
| Entrez ID | 30813 |
| Gene full name | visual system homeobox 1 |
| Other gene symbols | CAASDS KTCN KTCN1 PPCD PPD RINX |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0042551 | Neuron maturation | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0050896 | Response to stimulus | IEA | biological_process |
| GO:0060040 | Retinal bipolar neuron differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8185392652 | 0.8671536416 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0588425469 |
| GSE13712_SHEAR | Down | -0.0002003685 |
| GSE13712_STATIC | Down | -0.0064551908 |
| GSE19018 | Up | 0.0040142085 |
| GSE19899_A1 | Up | 0.0235942125 |
| GSE19899_A2 | Up | 0.0727115850 |
| PubMed_21979375_A1 | Up | 0.1535563570 |
| PubMed_21979375_A2 | Down | -0.0057061502 |
| GSE35957 | Up | 0.0233346173 |
| GSE36640 | Up | 0.0113648947 |
| GSE54402 | Up | 0.0211285598 |
| GSE9593 | Down | -0.0030570148 |
| GSE43922 | Up | 0.0225356256 |
| GSE24585 | Down | -0.0532596243 |
| GSE37065 | Down | -0.0115051406 |
| GSE28863_A1 | Down | -0.1123278802 |
| GSE28863_A2 | Up | 0.0649482514 |
| GSE28863_A3 | Up | 0.1519368068 |
| GSE28863_A4 | Down | -0.0026984018 |
| GSE48662 | Up | 0.0370711266 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
