HCSGD entry for SNX12
1. General information
| Official gene symbol | SNX12 |
|---|---|
| Entrez ID | 29934 |
| Gene full name | sorting nexin 12 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0035091 | Phosphatidylinositol binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9394952433 | 0.0280706926 | 0.9999902473 | 0.3187775237 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0377596835 |
| GSE13712_SHEAR | Down | -0.1705342114 |
| GSE13712_STATIC | Up | 0.0718466601 |
| GSE19018 | Down | -0.1304307422 |
| GSE19899_A1 | Down | -0.2808287452 |
| GSE19899_A2 | Down | -0.1777832993 |
| PubMed_21979375_A1 | Down | -1.0227024757 |
| PubMed_21979375_A2 | Down | -1.5650702049 |
| GSE35957 | Up | 0.2089630472 |
| GSE36640 | Down | -0.0642037483 |
| GSE54402 | Up | 0.1267022001 |
| GSE9593 | Up | 0.3880877111 |
| GSE43922 | Down | -0.1396902650 |
| GSE24585 | Down | -0.1229741467 |
| GSE37065 | Down | -0.2070911831 |
| GSE28863_A1 | Down | -0.4444253536 |
| GSE28863_A2 | Down | -0.4851790457 |
| GSE28863_A3 | Down | -0.6170419982 |
| GSE28863_A4 | Up | 0.2444422114 |
| GSE48662 | Down | -0.0927077075 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020105 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022294 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025315 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031489 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1229-3p | MIMAT0005584 | MIRT036369 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043791 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT050375 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052243 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
