HCSGD entry for TRA2A
1. General information
| Official gene symbol | TRA2A |
|---|---|
| Entrez ID | 29896 |
| Gene full name | transformer 2 alpha homolog (Drosophila) |
| Other gene symbols | AWMS1 HSU53209 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000398 | MRNA splicing, via spliceosome | IDA | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5723112382 | 0.0840044109 | 0.9999902473 | 0.5505677540 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2908970593 |
| GSE13712_SHEAR | Up | 0.6192328490 |
| GSE13712_STATIC | Up | 0.0879235960 |
| GSE19018 | Up | 0.1711803170 |
| GSE19899_A1 | Down | -0.1682743637 |
| GSE19899_A2 | Down | -0.5073110828 |
| PubMed_21979375_A1 | Down | -0.9521870976 |
| PubMed_21979375_A2 | Down | -0.3561425562 |
| GSE35957 | Down | -0.2223777200 |
| GSE36640 | Up | 0.1436438868 |
| GSE54402 | Down | -0.1709774285 |
| GSE9593 | Down | -0.3316873277 |
| GSE43922 | Down | -0.3332723231 |
| GSE24585 | Up | 0.2561248951 |
| GSE37065 | Up | 0.1097410834 |
| GSE28863_A1 | Up | 0.2226981880 |
| GSE28863_A2 | Up | 0.3704877991 |
| GSE28863_A3 | Down | -0.0325172918 |
| GSE28863_A4 | Down | -0.3714529601 |
| GSE48662 | Up | 0.0880152656 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-374b-5p | MIMAT0004955 | MIRT016048 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-196b-5p | MIMAT0001080 | MIRT042676 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047833 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
