HCSGD entry for TRPM5
1. General information
| Official gene symbol | TRPM5 |
|---|---|
| Entrez ID | 29850 |
| Gene full name | transient receptor potential cation channel, subfamily M, member 5 |
| Other gene symbols | LTRPC5 MTR1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005216 | Ion channel activity | TAS | molecular_function |
| GO:0005227 | Calcium activated cation channel activity | IEA | molecular_function |
| GO:0005244 | Voltage-gated ion channel activity | IEA | molecular_function |
| GO:0005267 | Potassium channel activity | IEA | molecular_function |
| GO:0005272 | Sodium channel activity | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4322276509 | 0.8011202006 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0453490249 |
| GSE13712_SHEAR | Up | 0.2289201061 |
| GSE13712_STATIC | Up | 0.1009329783 |
| GSE19018 | Down | -0.0173540933 |
| GSE19899_A1 | Down | -0.0672211309 |
| GSE19899_A2 | Down | -0.0320907024 |
| PubMed_21979375_A1 | Down | -0.0571096496 |
| PubMed_21979375_A2 | Down | -0.1083041185 |
| GSE35957 | Down | -0.1033870803 |
| GSE36640 | Down | -0.0588289552 |
| GSE54402 | Up | 0.0592439531 |
| GSE9593 | Up | 0.0906802350 |
| GSE43922 | Up | 0.0491905467 |
| GSE24585 | Up | 0.1064199057 |
| GSE37065 | Down | -0.0811526143 |
| GSE28863_A1 | Down | -0.1262118139 |
| GSE28863_A2 | Down | -0.0394429332 |
| GSE28863_A3 | Up | 0.2828138793 |
| GSE28863_A4 | Up | 0.1766470329 |
| GSE48662 | Up | 0.8623437881 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1227-3p | MIMAT0005580 | MIRT036399 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
