HCSGD entry for BABAM1
1. General information
| Official gene symbol | BABAM1 |
|---|---|
| Entrez ID | 29086 |
| Gene full name | BRISC and BRCA1 A complex member 1 |
| Other gene symbols | C19orf62 MERIT40 NBA1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006302 | Double-strand break repair | IMP | biological_process |
| GO:0010212 | Response to ionizing radiation | IMP | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0031572 | G2 DNA damage checkpoint | IMP | biological_process |
| GO:0045739 | Positive regulation of DNA repair | IEA IMP | biological_process |
| GO:0070531 | BRCA1-A complex | IDA IEA | cellular_component |
| GO:0070536 | Protein K63-linked deubiquitination | IMP | biological_process |
| GO:0070552 | BRISC complex | IDA IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8551616732 | 0.1202432278 | 0.9999902473 | 0.6660189394 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4322396716 |
| GSE13712_SHEAR | Down | -0.0246285068 |
| GSE13712_STATIC | Up | 0.0753812321 |
| GSE19018 | Up | 0.1150266227 |
| GSE19899_A1 | Down | -0.7464666888 |
| GSE19899_A2 | Down | -0.2200772248 |
| PubMed_21979375_A1 | Down | -0.2443641786 |
| PubMed_21979375_A2 | Down | -1.2499140663 |
| GSE35957 | Down | -0.2036446638 |
| GSE36640 | Down | -0.1006597771 |
| GSE54402 | Down | -0.0907024364 |
| GSE9593 | Up | 0.0511145324 |
| GSE43922 | Up | 0.0009278249 |
| GSE24585 | Up | 0.0372110545 |
| GSE37065 | Down | -0.1955805174 |
| GSE28863_A1 | Down | -0.0687288368 |
| GSE28863_A2 | Down | -0.2009290359 |
| GSE28863_A3 | Up | 0.1446600696 |
| GSE28863_A4 | Up | 0.1630098361 |
| GSE48662 | Down | -0.3292191789 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022677 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029479 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-107 | MIMAT0000104 | MIRT048297 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
