HCSGD entry for CCDC59
1. General information
| Official gene symbol | CCDC59 |
|---|---|
| Entrez ID | 29080 |
| Gene full name | coiled-coil domain containing 59 |
| Other gene symbols | BR22 TAP26 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8950941568 | 0.1014282930 | 0.9999902473 | 0.6098799452 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0760216528 |
| GSE13712_SHEAR | Down | -0.0966055281 |
| GSE13712_STATIC | Up | 0.0482128309 |
| GSE19018 | Down | -0.2809129697 |
| GSE19899_A1 | Down | -0.0095841890 |
| GSE19899_A2 | Up | 0.1440054349 |
| PubMed_21979375_A1 | Up | 0.6943885552 |
| PubMed_21979375_A2 | Down | -0.1059626503 |
| GSE35957 | Down | -0.4594967687 |
| GSE36640 | Down | -0.9516053061 |
| GSE54402 | Up | 0.2644996774 |
| GSE9593 | Down | -0.4969193098 |
| GSE43922 | Down | -0.1075983911 |
| GSE24585 | Down | -0.3310476258 |
| GSE37065 | Up | 0.3242447674 |
| GSE28863_A1 | Down | -0.0096736646 |
| GSE28863_A2 | Up | 0.0705913508 |
| GSE28863_A3 | Down | -0.1308773213 |
| GSE28863_A4 | Down | -0.0961683690 |
| GSE48662 | Down | -0.4364642830 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019739 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030420 | Microarray | Functional MTI (Weak) | 19748357 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051306 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
