HCSGD entry for TRIM42

1. General information

Official gene symbolTRIM42
Entrez ID287015
Gene full nametripartite motif containing 42
Other gene symbolsPPP1R40
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005622IntracellularIEAcellular_component
GO:0008270Zinc ion bindingIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.81128927470.79547558980.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0316274691
GSE13712_SHEARUp0.0901018451
GSE13712_STATICDown-0.0650789557
GSE19018Down-0.0034374540
GSE19899_A1Up0.0319474033
GSE19899_A2Down-0.0557990775
PubMed_21979375_A1Down-0.0103248982
PubMed_21979375_A2Up0.1373702408
GSE35957Up0.1578509416
GSE36640Up0.0223368468
GSE54402Up0.0031629004
GSE9593Down-0.0279449604
GSE43922Up0.0132977262
GSE24585Up0.2429092719
GSE37065Down-0.0964182367
GSE28863_A1Up0.0256652211
GSE28863_A2Up0.0028645211
GSE28863_A3Up0.0040221927
GSE28863_A4Down-0.0175236237
GSE48662Down-0.0419077470

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.