HCSGD entry for ATG9B
1. General information
| Official gene symbol | ATG9B |
|---|---|
| Entrez ID | 285973 |
| Gene full name | autophagy related 9B |
| Other gene symbols | APG9L2 NOS3AS SONE |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000045 | Autophagic vacuole assembly | IDA | biological_process |
| GO:0000421 | Autophagic vacuole membrane | IEA | cellular_component |
| GO:0005776 | Autophagic vacuole | IEA | cellular_component |
| GO:0006914 | Autophagy | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0031410 | Cytoplasmic vesicle | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6435038182 | 0.8264414726 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1234371946 |
| GSE13712_SHEAR | Down | -0.1113209031 |
| GSE13712_STATIC | Up | 0.0836618368 |
| GSE19018 | Up | 0.2133218193 |
| GSE19899_A1 | Up | 0.0877483679 |
| GSE19899_A2 | Up | 0.0428366025 |
| PubMed_21979375_A1 | Up | 0.1771724651 |
| PubMed_21979375_A2 | Up | 0.0213238347 |
| GSE35957 | Down | -0.0041588126 |
| GSE36640 | Down | -0.0806461665 |
| GSE54402 | Down | -0.0709508333 |
| GSE9593 | Down | -0.0387361662 |
| GSE43922 | Up | 0.1103551915 |
| GSE24585 | Up | 0.0320529371 |
| GSE37065 | Up | 0.0125460829 |
| GSE28863_A1 | Down | -0.2212527621 |
| GSE28863_A2 | Down | -0.0660419353 |
| GSE28863_A3 | Up | 0.3922722865 |
| GSE28863_A4 | Up | 0.0457377463 |
| GSE48662 | Up | 0.0664760190 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 22606351 | Among the 24 human autophagy-related genes examined, a 12-fold increase of ATG9B at day 4 and a 20-fold increase of ATG18 at day 2 after DOX treatment were noted |
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