HCSGD entry for RPUSD3
1. General information
| Official gene symbol | RPUSD3 |
|---|---|
| Entrez ID | 285367 |
| Gene full name | RNA pseudouridylate synthase domain containing 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001522 | Pseudouridine synthesis | IEA | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0009982 | Pseudouridine synthase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9214932373 | 0.3651130846 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0191739927 |
| GSE13712_SHEAR | Down | -0.0979810666 |
| GSE13712_STATIC | Down | -0.0105500220 |
| GSE19018 | Up | 0.1077950626 |
| GSE19899_A1 | Up | 0.0140641520 |
| GSE19899_A2 | Up | 0.4128432095 |
| PubMed_21979375_A1 | Down | -0.2807391647 |
| PubMed_21979375_A2 | Down | -0.0616080820 |
| GSE35957 | Down | -0.2111128523 |
| GSE36640 | Up | 0.2030699947 |
| GSE54402 | Down | -0.1083772207 |
| GSE9593 | Down | -0.2677978056 |
| GSE43922 | Up | 0.0713797877 |
| GSE24585 | Down | -0.0533100593 |
| GSE37065 | Down | -0.2305049873 |
| GSE28863_A1 | Down | -0.1378739448 |
| GSE28863_A2 | Down | -0.2078554013 |
| GSE28863_A3 | Down | -0.1231532252 |
| GSE28863_A4 | Down | -0.0730350432 |
| GSE48662 | Down | -0.0073828380 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038512 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
