HCSGD entry for TSEN54
1. General information
| Official gene symbol | TSEN54 |
|---|---|
| Entrez ID | 283989 |
| Gene full name | tRNA splicing endonuclease 54 homolog (S. cerevisiae) |
| Other gene symbols | PCH2A PCH4 SEN54L sen54 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005730 | Nucleolus | IEA | cellular_component |
| GO:0006388 | TRNA splicing, via endonucleolytic cleavage and ligation | IDA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1339123438 | 0.9453121006 | 0.7411074012 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0688777998 |
| GSE13712_SHEAR | Up | 0.5018976690 |
| GSE13712_STATIC | Up | 0.2947570290 |
| GSE19018 | Up | 0.0577892352 |
| GSE19899_A1 | Down | -0.0439174518 |
| GSE19899_A2 | Up | 0.2022098183 |
| PubMed_21979375_A1 | Up | 0.5353642087 |
| PubMed_21979375_A2 | Up | 0.1958462752 |
| GSE35957 | Down | -0.2996745896 |
| GSE36640 | Down | -0.0657150395 |
| GSE54402 | Up | 0.2549134642 |
| GSE9593 | Down | -0.0978853884 |
| GSE43922 | Up | 0.1120505501 |
| GSE24585 | Down | -0.0641061420 |
| GSE37065 | Down | -0.1036482030 |
| GSE28863_A1 | Down | -0.0913979454 |
| GSE28863_A2 | Down | -0.0017521732 |
| GSE28863_A3 | Up | 0.1612646174 |
| GSE28863_A4 | Up | 0.0647911151 |
| GSE48662 | Up | 1.0599040348 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022257 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-484 | MIMAT0002174 | MIRT042278 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
