HCSGD entry for GPM6B
1. General information
| Official gene symbol | GPM6B |
|---|---|
| Entrez ID | 2824 |
| Gene full name | glycoprotein M6B |
| Other gene symbols | M6B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001503 | Ossification | IEA | biological_process |
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005886 | Plasma membrane | ISS | cellular_component |
| GO:0007399 | Nervous system development | NAS | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0030501 | Positive regulation of bone mineralization | IMP | biological_process |
| GO:0032956 | Regulation of actin cytoskeleton organization | IMP | biological_process |
| GO:0045121 | Membrane raft | ISS | cellular_component |
| GO:0051612 | Negative regulation of serotonin uptake | ISS | biological_process |
| GO:0051893 | Regulation of focal adhesion assembly | IMP | biological_process |
| GO:0085029 | Extracellular matrix assembly | IMP | biological_process |
| GO:2000009 | Negative regulation of protein localization to cell surface | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8709681433 | 0.0096051366 | 0.9999902473 | 0.1938779141 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1719253593 |
| GSE13712_SHEAR | Down | -0.0201929178 |
| GSE13712_STATIC | Down | -0.0064679292 |
| GSE19018 | Down | -0.6180630113 |
| GSE19899_A1 | Down | -0.0801913241 |
| GSE19899_A2 | Down | -1.7606015384 |
| PubMed_21979375_A1 | Down | -0.0941984926 |
| PubMed_21979375_A2 | Down | -2.0328375967 |
| GSE35957 | Down | -0.1696817606 |
| GSE36640 | Down | -1.3064239700 |
| GSE54402 | Down | -0.0374201242 |
| GSE9593 | Up | 0.3574665303 |
| GSE43922 | Up | 0.0118275794 |
| GSE24585 | Down | -1.2832907783 |
| GSE37065 | Down | -0.2663358834 |
| GSE28863_A1 | Down | -0.0842008530 |
| GSE28863_A2 | Down | -0.0865215344 |
| GSE28863_A3 | Up | 0.2278856006 |
| GSE28863_A4 | Up | 0.0892212103 |
| GSE48662 | Up | 0.0965464165 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020640 | Reporter assay | Functional MTI | 20680360 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022309 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051427 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052287 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052418 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
