HCSGD entry for RAB30
1. General information
| Official gene symbol | RAB30 |
|---|---|
| Entrez ID | 27314 |
| Gene full name | RAB30, member RAS oncogene family |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003924 | GTPase activity | TAS | molecular_function |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005795 | Golgi stack | TAS | cellular_component |
| GO:0005801 | Cis-Golgi network | IDA | cellular_component |
| GO:0005802 | Trans-Golgi network | IDA | cellular_component |
| GO:0006184 | GTP catabolic process | TAS | biological_process |
| GO:0007030 | Golgi organization | IMP | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0008152 | Metabolic process | TAS | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0031985 | Golgi cisterna | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0466024999 | 0.2601500399 | 0.4780696922 | 0.9789005289 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2358982058 |
| GSE13712_SHEAR | Up | 0.1499599510 |
| GSE13712_STATIC | Down | -0.2076432418 |
| GSE19018 | Down | -0.3005868117 |
| GSE19899_A1 | Up | 0.3835009521 |
| GSE19899_A2 | Down | -0.1603575480 |
| PubMed_21979375_A1 | Up | 0.1375906391 |
| PubMed_21979375_A2 | Up | 0.5968678711 |
| GSE35957 | Down | -0.2096466645 |
| GSE36640 | Up | 1.6277533595 |
| GSE54402 | Down | -0.2464376387 |
| GSE9593 | Up | 0.1540050317 |
| GSE43922 | Up | 0.4305513777 |
| GSE24585 | Up | 0.0895530724 |
| GSE37065 | Up | 0.0841662818 |
| GSE28863_A1 | Up | 0.6514886613 |
| GSE28863_A2 | Up | 0.3712176395 |
| GSE28863_A3 | Down | -1.4326334879 |
| GSE28863_A4 | Up | 0.0972325237 |
| GSE48662 | Up | 0.2172288693 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-200a-3p | MIMAT0000682 | MIRT000774 | Microarray//Northern blot | Functional MTI (Weak) | 16331254 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT001424 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-29c-3p | MIMAT0000681 | MIRT020408 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020831 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1 | MIMAT0000416 | MIRT023855 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027660 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029648 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
