HCSGD entry for CSDC2
1. General information
| Official gene symbol | CSDC2 |
|---|---|
| Entrez ID | 27254 |
| Gene full name | cold shock domain containing C2, RNA binding |
| Other gene symbols | PIPPIN dJ347H13.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003723 | RNA binding | NAS | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9834442840 | 0.0055598913 | 0.9999902473 | 0.1508679381 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1571425620 |
| GSE13712_SHEAR | Down | -0.0901367629 |
| GSE13712_STATIC | Down | -0.1984378686 |
| GSE19018 | Down | -0.5689430611 |
| GSE19899_A1 | Down | -0.4038142540 |
| GSE19899_A2 | Down | -0.5864536246 |
| PubMed_21979375_A1 | Down | -2.7047678446 |
| PubMed_21979375_A2 | Down | -0.9936928789 |
| GSE35957 | Down | -0.0197556125 |
| GSE36640 | Down | -0.1560649841 |
| GSE54402 | Down | -1.4709812876 |
| GSE9593 | Up | 0.0174696466 |
| GSE43922 | Down | -0.4122806274 |
| GSE24585 | Up | 0.0313949596 |
| GSE37065 | Up | 0.0992684177 |
| GSE28863_A1 | Down | -0.4434515045 |
| GSE28863_A2 | Down | -0.3898158665 |
| GSE28863_A3 | Up | 0.3536183547 |
| GSE28863_A4 | Up | 0.0059952992 |
| GSE48662 | Up | 0.1589453857 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT001931 | qRT-PCR//ChIP | Functional MTI (Weak) | 18227514 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
