HCSGD entry for CHMP2A
1. General information
| Official gene symbol | CHMP2A |
|---|---|
| Entrez ID | 27243 |
| Gene full name | charged multivesicular body protein 2A |
| Other gene symbols | BC-2 BC2 CHMP2 VPS2 VPS2A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | IEA TAS | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0019904 | Protein domain specific binding | IPI | molecular_function |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9378952585 | 0.0196270392 | 0.9999902473 | 0.2729747491 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1474725258 |
| GSE13712_SHEAR | Down | -0.4336068537 |
| GSE13712_STATIC | Down | -0.3545339522 |
| GSE19018 | Down | -0.3477019717 |
| GSE19899_A1 | Down | -1.0021595373 |
| GSE19899_A2 | Down | -0.8333297917 |
| PubMed_21979375_A1 | Down | -0.4750869441 |
| PubMed_21979375_A2 | Down | -1.0928207976 |
| GSE35957 | Up | 0.0137552203 |
| GSE36640 | Up | 0.2082878276 |
| GSE54402 | Down | -0.0771413060 |
| GSE9593 | Up | 0.0457420935 |
| GSE43922 | Down | -0.6246094950 |
| GSE24585 | Up | 0.3147140026 |
| GSE37065 | Up | 0.3022478593 |
| GSE28863_A1 | Down | -0.4467771474 |
| GSE28863_A2 | Down | -0.4941351181 |
| GSE28863_A3 | Down | -0.0689846723 |
| GSE28863_A4 | Up | 0.2617417907 |
| GSE48662 | Down | -0.1531672499 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT001642 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-1 | MIMAT0000416 | MIRT023921 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039927 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-500a-3p | MIMAT0002871 | MIRT041151 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-339-5p | MIMAT0000764 | MIRT042781 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045097 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
