HCSGD entry for BBS9
1. General information
| Official gene symbol | BBS9 |
|---|---|
| Entrez ID | 27241 |
| Gene full name | Bardet-Biedl syndrome 9 |
| Other gene symbols | B1 C18 D1 PTHB1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005815 | Microtubule organizing center | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0007601 | Visual perception | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0030030 | Cell projection organization | IEA | biological_process |
| GO:0034464 | BBSome | IDA IEA | cellular_component |
| GO:0045444 | Fat cell differentiation | IEA ISS | biological_process |
| GO:0050896 | Response to stimulus | IEA | biological_process |
| GO:0060170 | Ciliary membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8656990958 | 0.1465143346 | 0.9999902473 | 0.7396248178 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1646549087 |
| GSE13712_SHEAR | Down | -0.3426310284 |
| GSE13712_STATIC | Down | -0.0729880638 |
| GSE19018 | Up | 0.2226083747 |
| GSE19899_A1 | Down | -0.0163144140 |
| GSE19899_A2 | Down | -0.1808261456 |
| PubMed_21979375_A1 | Down | -0.5704450685 |
| PubMed_21979375_A2 | Down | -0.0877207672 |
| GSE35957 | Down | -0.0680657360 |
| GSE36640 | Up | 0.0065239154 |
| GSE54402 | Down | -0.1482705207 |
| GSE9593 | Up | 0.4908177386 |
| GSE43922 | Up | 0.0082641773 |
| GSE24585 | Up | 0.4087294965 |
| GSE37065 | Down | -0.2277073473 |
| GSE28863_A1 | Up | 0.0290276797 |
| GSE28863_A2 | Up | 0.2011647568 |
| GSE28863_A3 | Down | -0.5809499521 |
| GSE28863_A4 | Down | -0.3012224641 |
| GSE48662 | Down | -0.0341788782 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017564 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 10998569 | Ganglioside molecular species containing C18 nervous tissues and neuronal cell cultures |
| 10998569 | In this review we discuss the chemistry, physico-chemistry and metabolism of ganglioside species differing in LCB length and introduce the hypothesis that the varying ratio between C18- and C20-gangliosides during CNS development and aging can be instrumental in modulating membrane domain organisation and cell properties |
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