HCSGD entry for SMC1B


1. General information

Official gene symbolSMC1B
Entrez ID27127
Gene full namestructural maintenance of chromosomes 1B
Other gene symbolsSMC1BETA SMC1L2 bK268H5 bK268H5.5
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000775Chromosome, centromeric regionIEAcellular_component
GO:0000800Lateral elementIEAcellular_component
GO:0003677DNA bindingIEAmolecular_function
GO:0003682Chromatin bindingIEAmolecular_function
GO:0005524ATP bindingIEAmolecular_function
GO:0006281DNA repairIEAbiological_process
GO:0006310DNA recombinationIEAbiological_process
GO:0007064Mitotic sister chromatid cohesionIEAbiological_process
GO:0007126MeiosisIEAbiological_process
GO:0030893Meiotic cohesin complexIDAcellular_component
GO:0034991Nuclear meiotic cohesin complexIEAcellular_component
GO:0046982Protein heterodimerization activityIEAmolecular_function
Entries Per Page
Displaying Page of

4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.44937794540.87603276470.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.1393871243
GSE13712_SHEARDown-0.1355206074
GSE13712_STATICUp0.2471942651
GSE19018Up0.3325919102
GSE19899_A1Up0.1191810446
GSE19899_A2Down-0.1886126779
PubMed_21979375_A1Up0.1746828272
PubMed_21979375_A2Down-0.0129111202
GSE35957Up0.0883841130
GSE36640Up0.0940650699
GSE54402Up0.0053123026
GSE9593Up0.0237444630
GSE43922Up0.0174332408
GSE24585Up0.3920184286
GSE37065Up0.0895919050
GSE28863_A1Down-0.0844393799
GSE28863_A2Down-0.0462584887
GSE28863_A3Up0.1727439886
GSE28863_A4Down-0.0086497969
GSE48662Down-0.0214468698

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.