HCSGD entry for B3GAT1


1. General information

Official gene symbolB3GAT1
Entrez ID27087
Gene full namebeta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
Other gene symbolsCD57 GLCATP GLCUATP HNK1 LEU7 NK-1 NK1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000139Golgi membraneTAScellular_component
GO:0005975Carbohydrate metabolic processTASbiological_process
GO:0006486Protein glycosylationIEAbiological_process
GO:0008499UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activityIEAmolecular_function
GO:0015018Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activityIEAmolecular_function
GO:0016020MembraneIEAcellular_component
GO:0016021Integral component of membraneIEAcellular_component
GO:0030203Glycosaminoglycan metabolic processTASbiological_process
GO:0030204Chondroitin sulfate metabolic processTASbiological_process
GO:0044281Small molecule metabolic processTASbiological_process
GO:0046872Metal ion bindingIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.66831857070.77457585200.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0587525610
GSE13712_SHEARDown-0.0105843231
GSE13712_STATICDown-0.2599389193
GSE19018Down-0.0121220433
GSE19899_A1Up0.1108141844
GSE19899_A2Up0.2074372645
PubMed_21979375_A1Up0.3101881769
PubMed_21979375_A2Up0.0709034313
GSE35957Up0.2086634059
GSE36640Up0.0656558050
GSE54402Up0.0376040421
GSE9593Up0.0829359873
GSE43922Up0.1154109066
GSE24585Down-0.3058062456
GSE37065Down-0.0243952013
GSE28863_A1Down-0.2238819210
GSE28863_A2Up0.1000171474
GSE28863_A3Up0.1129662046
GSE28863_A4Down-0.0675131624
GSE48662Down-0.0658407881

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Name

Drug

Accession number

D-tartaric acidDB01694 EXPT03007
Uridine-5'-DiphosphateDB03435 EXPT03172

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-132-3pMIMAT0000426MIRT021807MicroarrayFunctional MTI (Weak)17612493
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: 16 abstracts the gene occurs.


PubMed ID of the article

Sentenece the gene occurs

27102208The cells exhibited a senescent secretory effector phenotype: KLRG-1+/CD57+/CD160+/CD28-
26711627METHODS: Changes in CD8+ T-cell subsets, based on the expression of CD28 and CD57, were analysed in patients with various forms of cancer affecting the lungs, undergoing chemotherapy and in a control group over six months, using multi-colour flow cytometry
26277688Aging-associated subpopulations of human CD8+ T-lymphocytes identified by their CD28 and CD57 phenotypes
26277688METHODS: We identified, by flow cytometry, subpopulations of CD8+ T-cells based on CD57 and CD28 expression, and tested them for some markers of cellular senescence, apoptosis, differentiation and homing
26097880Rapid and efficient transfer of the T cell aging marker CD57 from glioblastoma stem cells to CAR T cells
26097880Upon coincubation with GBM-SCs, we observed strong upregulation of the T cell aging marker CD57, but other phenotypical or functional changes usually associated with terminal T cell differentiation could not immediately be detected
26097880Here, we provide evidence suggesting that CD57 is rapidly and efficiently transferred from CD57+ GBM-SCs to preactivated T cells and that the transfer is greatly enhanced by specific CAR/ligand interaction
26097880After separation from CD57+ tumor cells, CD57 epitope expression on T cells decreased only slowly over several days
26097880We conclude that CD57 transfer from tumor cells to T cells may occur in patients with CD57+ tumors and that it may have to be considered in the interpretation of phenotyping results for tumor-infiltrating lymphocytes and perhaps also in the characterization of tumor-specific T cells from tumor or lymph node homogenates or peripheral blood mononuclear cells
25604328Immunosenescence was investigated by analysing CD57(+) CD28(-) levels, immune activation by analysing CD38(+) HLA-DR(+) levels, inflammation by analysing interleukin (IL)-6 levels, and microbial translocation by analysing lipopolysaccharide (LPS) and soluble CD14 (sCD14) levels
25574956RESULTS: Activated CD25(+) T cells and activated/senescent CD69(+)/CD57(+)/CD28(null) CD4(+) T cells, interleukin-6, and CRP were associated with PFT abnormalities
25426558Patient-derived glioblastoma stem cells are killed by CD133-specific CAR T cells but induce the T cell aging marker CD57
25426558Direct contact with patient-derived GBM-SCs caused rapid upregulation of CD57 on the CAR T cells, a molecule known to mark terminally or near-terminally differentiated T cells
25426558CD57 is also expressed on tumor cells of neural crest origin and has been preferentially found on highly aggressive, undifferentiated, multipotent CSC-like cells
25426558We found that CD57 was upregulated on activated T cells only upon contact with CD57+ patient-derived GBM-SCs, but not with conventional CD57-negative glioma lines
25426558However, CD57 was not downregulated on the GBM-SCs upon their differentiation, indicating that this molecule is not a bona fide CSC marker for GBM
25426558Differentiated GBM cells still induced CD57 on CAR T cells and other activated T cells
25426558Therefore, CD57 can apparently be upregulated on activated human T cells by mere contact with CD57+ target cells
25001861The classical markers of alpha/beta T cell aging, including CD28, CD27, and CD57, did not prove significant for gamma/delta T cells
24499954Changes were related to proportions of CD4 T cells expressing HLA-DR or CD57 and plasma levels of sCD14, CXCL9 and CXCL10
24499954CD127 expression correlated inversely with proportions of CD4CD57 T cells, and pSTAT5 induction correlated inversely with CD4 T-cell expression of HLA-DR and CD57
23962178Moreover, increased T cell differentiation was observed with higher percentages of CD57+ and CD28null CD4+ and CD8+ memory T cells
23435301RESULTS: There was increased frequency of CD4+ and CD8+ T cells with an immunosenescence phenotype (CD57+ and CD28-) in cases vs
22102004CD28-, CD57+ and KLRG1+ are cell surface markers that have been used to describe senescent T-lymphocytes in humans
22102004Using five-colour flow cytometry, we analyzed peripheral blood T-lymphocytes for their expression of CD28, CD57 and KLRG1 in 11 young (Y) and 11 old (O) apparently healthy human subjects
22102004Populations that were more frequent in the elderly participants were characterised as CD28+ CD57+, CD28- CD57+ or CD28- CD57-
20100671CD57 expression by T cells in the female genital tract of HIV-zx1 infected women
20100671CD57 expression by T cells has been associated with enhanced migratory potential and CD57+ T cells have been shown to accumulate in tissues during the late stages of HIV disease
20100671We investigated the impact of HIV-infection and clinical status on the expression of CD57 by T cells from the female genital tract in 13 HIV-infected and 5 uninfected women
20100671We found that cervical and blood-derived T cells expressed similar frequencies of CD57
20100671The frequency of CD57 expression by cervical or blood T cells was not associated with clinical status (CD4 counts)
19602548As early as 2 months after HSCT, CD8(+) T cells from patients were predominantly CD28(-) CD57(+) and had relatively short telomeres, consistent with cellular senescence
17416406CD57 expression correlates with alveolitis severity in subjects with beryllium-induced disease
17416406OBJECTIVE: The aims of this study were to determine the relationship between CD57 expression, a marker of T-cell senescence, and severity of chronic beryllium disease (CBD) and to determine the phenotypic and functional characteristics that differentiate beryllium-specific CD4(+) T cells in lung and blood
17416406METHODS: CD57 expression on beryllium-responsive IFN-gamma-expressing and IL-2-expressing CD4(+) T cells in blood and lung of 17 beryllium-sensitized and 20 CBD subjects was determined
17416406Although CD57 expression on blood and BAL cells was associated with a reduced proliferative potential, examination of beryllium-specific CD4(+) T cells in blood and lung revealed no difference in CD57 expression on cells that produced IFN-gamma only versus IFN-gamma and IL-2
17416406CONCLUSION: These data suggest that CD57 expression on CD4(+) T cells is an important phenotypic marker to assess lung inflammation and the functional competence of the CD4(+) T-cell compartment in CBD
17416406CLINICAL IMPLICATIONS: These findings suggest that CD57 is a marker of lung inflammation and potentially, disease severity
17379755As a consequence of clonal expansion, some T lymphocytes acquire a senescent phenotype, fail to replicate in response to further antigenic stimulation, and express the killer cell lectin-like receptor G1 (KLRG1) and/or CD57
17379755Blood lymphocytes isolated before, immediately after, and 1 h after exercise were assessed for cell surface expression of KLRG1, CD57, CD28, CD45RA, CD45RO, CD62L, and lymphocyte subset markers (CD3, CD4, CD8, CD56) by flow cytometry
17379755The percentage of all CD3+ T lymphocytes expressing KLRG1 and CD57 increased with exercise (P < 0
17379755Mobilized T-lymphocyte populations expressing KLRG1 and CD57 appeared to extravasate the peripheral blood compartment after 1 h of recovery
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