HCSGD entry for RPUSD2
1. General information
| Official gene symbol | RPUSD2 |
|---|---|
| Entrez ID | 27079 |
| Gene full name | RNA pseudouridylate synthase domain containing 2 |
| Other gene symbols | C15orf19 C18B11 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001522 | Pseudouridine synthesis | IEA | biological_process |
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0009982 | Pseudouridine synthase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5203233274 | 0.3943903423 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1232993677 |
| GSE13712_SHEAR | Down | -0.2259038810 |
| GSE13712_STATIC | Down | -0.0689910615 |
| GSE19018 | Down | -0.0885548685 |
| GSE19899_A1 | Up | 0.0930101920 |
| GSE19899_A2 | Up | 0.5070945170 |
| PubMed_21979375_A1 | Up | 1.0946264281 |
| PubMed_21979375_A2 | Up | 0.1348902598 |
| GSE35957 | Down | -0.1056510994 |
| GSE36640 | Down | -0.5058094035 |
| GSE54402 | Up | 0.0405131016 |
| GSE9593 | Down | -0.0804702726 |
| GSE43922 | Up | 0.0171793796 |
| GSE24585 | Down | -0.5592318006 |
| GSE37065 | Up | 0.0387392887 |
| GSE28863_A1 | Down | -0.0748157789 |
| GSE28863_A2 | Down | -0.0521383736 |
| GSE28863_A3 | Up | 0.0819237232 |
| GSE28863_A4 | Up | 0.0832171883 |
| GSE48662 | Down | -0.1573594282 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026035 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7d-5p | MIMAT0000065 | MIRT032131 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
