HCSGD entry for VPS41
1. General information
| Official gene symbol | VPS41 |
|---|---|
| Entrez ID | 27072 |
| Gene full name | vacuolar protein sorting 41 homolog (S. cerevisiae) |
| Other gene symbols | HVPS41 HVSP41 hVps41p |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005765 | Lysosomal membrane | IDA | cellular_component |
| GO:0005769 | Early endosome | IEA | cellular_component |
| GO:0005770 | Late endosome | IEA | cellular_component |
| GO:0005798 | Golgi-associated vesicle | IMP | cellular_component |
| GO:0005829 | Cytosol | IDA | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0008017 | Microtubule binding | IEA | molecular_function |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016020 | Membrane | IDA | cellular_component |
| GO:0016192 | Vesicle-mediated transport | IEA | biological_process |
| GO:0030897 | HOPS complex | IDA | cellular_component |
| GO:0048193 | Golgi vesicle transport | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2627856198 | 0.1311015311 | 0.9567040111 | 0.6971158384 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0624345644 |
| GSE13712_SHEAR | Down | -0.2931540932 |
| GSE13712_STATIC | Up | 0.0401413990 |
| GSE19018 | Up | 0.2742100177 |
| GSE19899_A1 | Down | -0.4931655650 |
| GSE19899_A2 | Down | -0.1786107364 |
| PubMed_21979375_A1 | Down | -0.5567334017 |
| PubMed_21979375_A2 | Up | 0.4999432187 |
| GSE35957 | Up | 0.7481903123 |
| GSE36640 | Up | 0.6567230006 |
| GSE54402 | Down | -0.4916937951 |
| GSE9593 | Up | 0.8088603675 |
| GSE43922 | Down | -0.2331136196 |
| GSE24585 | Up | 0.1510752374 |
| GSE37065 | Up | 0.0230380083 |
| GSE28863_A1 | Down | -0.4201427843 |
| GSE28863_A2 | Up | 0.2035680598 |
| GSE28863_A3 | Down | -0.7366593404 |
| GSE28863_A4 | Down | -0.2300701350 |
| GSE48662 | Up | 0.5265853727 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148a-3p | MIMAT0000243 | MIRT048028 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052120 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
