HCSGD entry for TRUB2
1. General information
| Official gene symbol | TRUB2 |
|---|---|
| Entrez ID | 26995 |
| Gene full name | TruB pseudouridine (psi) synthase homolog 2 (E. coli) |
| Other gene symbols | CLONE24922 RP11-339B21.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001522 | Pseudouridine synthesis | IEA | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0006396 | RNA processing | IEA | biological_process |
| GO:0008033 | TRNA processing | IEA | biological_process |
| GO:0009982 | Pseudouridine synthase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0737985525 | 0.6231876600 | 0.5771018419 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3820525004 |
| GSE13712_SHEAR | Up | 0.1181747865 |
| GSE13712_STATIC | Up | 0.1539262092 |
| GSE19018 | Down | -0.2414245481 |
| GSE19899_A1 | Up | 0.5936908233 |
| GSE19899_A2 | Up | 0.6870460466 |
| PubMed_21979375_A1 | Up | 0.3504844797 |
| PubMed_21979375_A2 | Up | 0.7627565886 |
| GSE35957 | Down | -0.4206307754 |
| GSE36640 | Down | -0.3488713069 |
| GSE54402 | Up | 0.5355465932 |
| GSE9593 | Down | -0.1797446206 |
| GSE43922 | Up | 0.4481219174 |
| GSE24585 | Up | 0.0501635406 |
| GSE37065 | Down | -0.0465141403 |
| GSE28863_A1 | Down | -0.2850882363 |
| GSE28863_A2 | Down | -0.3751423762 |
| GSE28863_A3 | Down | -0.2986722564 |
| GSE28863_A4 | Up | 0.1261844287 |
| GSE48662 | Down | -0.0743901268 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031822 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032411 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
