HCSGD entry for NUFIP1
1. General information
| Official gene symbol | NUFIP1 |
|---|---|
| Entrez ID | 26747 |
| Gene full name | nuclear fragile X mental retardation protein interacting protein 1 |
| Other gene symbols | NUFIP bA540M5.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000492 | Box C/D snoRNP assembly | IMP | biological_process |
| GO:0003677 | DNA binding | NAS | molecular_function |
| GO:0003723 | RNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005726 | Perichromatin fibrils | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0008023 | Transcription elongation factor complex | IDA | cellular_component |
| GO:0016363 | Nuclear matrix | IDA | cellular_component |
| GO:0022626 | Cytosolic ribosome | IDA | cellular_component |
| GO:0030515 | SnoRNA binding | IDA | molecular_function |
| GO:0030674 | Protein binding, bridging | IPI | molecular_function |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | IMP | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0048786 | Presynaptic active zone | IDA | cellular_component |
| GO:0070761 | Pre-snoRNP complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5331464420 | 0.0564381710 | 0.9999902473 | 0.4463920697 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2208135389 |
| GSE13712_SHEAR | Up | 0.0687507274 |
| GSE13712_STATIC | Up | 0.0742287836 |
| GSE19018 | Down | -1.0257728915 |
| GSE19899_A1 | Down | -0.2167491657 |
| GSE19899_A2 | Up | 0.0339963509 |
| PubMed_21979375_A1 | Up | 0.7668794904 |
| PubMed_21979375_A2 | Down | -0.1875799926 |
| GSE35957 | Down | -0.2787195873 |
| GSE36640 | Down | -0.4946831363 |
| GSE54402 | Down | -0.1317823095 |
| GSE9593 | Down | -0.1442220155 |
| GSE43922 | Up | 0.0563531682 |
| GSE24585 | Down | -0.1926603586 |
| GSE37065 | Down | -0.4303538304 |
| GSE28863_A1 | Up | 0.0617160285 |
| GSE28863_A2 | Up | 0.5576274309 |
| GSE28863_A3 | Up | 0.0123757069 |
| GSE28863_A4 | Down | -0.1747161807 |
| GSE48662 | Down | -0.2188922322 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024863 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026907 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
