HCSGD entry for NPHP4
1. General information
| Official gene symbol | NPHP4 |
|---|---|
| Entrez ID | 261734 |
| Gene full name | nephronophthisis 4 |
| Other gene symbols | POC10 SLSN4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005198 | Structural molecule activity | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005911 | Cell-cell junction | IDA | cellular_component |
| GO:0005923 | Tight junction | IEA | cellular_component |
| GO:0005929 | Cilium | IEA | cellular_component |
| GO:0007165 | Signal transduction | NAS | biological_process |
| GO:0007632 | Visual behavior | NAS | biological_process |
| GO:0016020 | Membrane | IC | cellular_component |
| GO:0016337 | Cell-cell adhesion | NAS | biological_process |
| GO:0030036 | Actin cytoskeleton organization | NAS | biological_process |
| GO:0035329 | Hippo signaling | TAS | biological_process |
| GO:0060041 | Retina development in camera-type eye | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7049197447 | 0.6477121918 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1458351672 |
| GSE13712_SHEAR | Down | -0.1862688284 |
| GSE13712_STATIC | Down | -0.0592626308 |
| GSE19018 | Up | 0.1043085577 |
| GSE19899_A1 | Up | 0.0328907667 |
| GSE19899_A2 | Down | -0.1204296594 |
| PubMed_21979375_A1 | Up | 0.4797688799 |
| PubMed_21979375_A2 | Up | 0.1197221834 |
| GSE35957 | Down | -0.2757802749 |
| GSE36640 | Down | -0.2442107938 |
| GSE54402 | Up | 0.3659280050 |
| GSE9593 | Down | -0.0952719301 |
| GSE43922 | Up | 0.0519896371 |
| GSE24585 | Down | -0.1154423059 |
| GSE37065 | Down | -0.2157830268 |
| GSE28863_A1 | Up | 0.0364514930 |
| GSE28863_A2 | Up | 0.2129673029 |
| GSE28863_A3 | Up | 0.1852731982 |
| GSE28863_A4 | Down | -0.0171933975 |
| GSE48662 | Up | 0.1674527741 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
