HCSGD entry for PHF19
1. General information
| Official gene symbol | PHF19 |
|---|---|
| Entrez ID | 26147 |
| Gene full name | PHD finger protein 19 |
| Other gene symbols | MTF2L1 PCL3 TDRD19B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0019827 | Stem cell maintenance | IEA | biological_process |
| GO:0035064 | Methylated histone residue binding | IDA IEA | molecular_function |
| GO:0035098 | ESC/E(Z) complex | IDA IEA | cellular_component |
| GO:0061087 | Positive regulation of histone H3-K27 methylation | IEA IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9758604080 | 0.0051245051 | 0.9999902473 | 0.1459115302 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4127173398 |
| GSE13712_SHEAR | Down | -0.2161872084 |
| GSE13712_STATIC | Down | -0.3825512277 |
| GSE19018 | Up | 0.0473907985 |
| GSE19899_A1 | Down | -0.4394452499 |
| GSE19899_A2 | Down | -0.7407638402 |
| PubMed_21979375_A1 | Up | 0.0577037372 |
| PubMed_21979375_A2 | Down | -1.0741937767 |
| GSE35957 | Down | -1.5940482555 |
| GSE36640 | Down | -1.2408938916 |
| GSE54402 | Down | -0.0121030597 |
| GSE9593 | Down | -1.1294554763 |
| GSE43922 | Down | -0.2782669555 |
| GSE24585 | Up | 0.1167898484 |
| GSE37065 | Down | -0.4436615053 |
| GSE28863_A1 | Up | 0.1762783300 |
| GSE28863_A2 | Up | 0.1920316744 |
| GSE28863_A3 | Down | -0.3360898569 |
| GSE28863_A4 | Up | 0.0987863581 |
| GSE48662 | Down | -0.8621242931 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT002687 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT002687 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016585 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025582 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026902 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027228 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-96-5p | MIMAT0000095 | MIRT027908 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT032068 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040639 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
