HCSGD entry for LSM14A
1. General information
| Official gene symbol | LSM14A |
|---|---|
| Entrez ID | 26065 |
| Gene full name | LSM14A, SCD6 homolog A (S. cerevisiae) |
| Other gene symbols | C19orf13 FAM61A RAP55 RAP55A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000932 | Cytoplasmic mRNA processing body | IDA | cellular_component |
| GO:0003690 | Double-stranded DNA binding | IEA | molecular_function |
| GO:0003725 | Double-stranded RNA binding | IEA | molecular_function |
| GO:0003727 | Single-stranded RNA binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006417 | Regulation of translation | IEA | biological_process |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0010494 | Cytoplasmic stress granule | IDA | cellular_component |
| GO:0033962 | Cytoplasmic mRNA processing body assembly | IDA IMP | biological_process |
| GO:0039529 | RIG-I signaling pathway | IEA | biological_process |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0060340 | Positive regulation of type I interferon-mediated signaling pathway | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9843845599 | 0.0367863265 | 0.9999902473 | 0.3613259328 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.6116816266 |
| GSE13712_SHEAR | Down | -0.4372631136 |
| GSE13712_STATIC | Down | -0.3144468495 |
| GSE19018 | Down | -0.0706448804 |
| GSE19899_A1 | Down | -0.2180740461 |
| GSE19899_A2 | Down | -0.3370867819 |
| PubMed_21979375_A1 | Down | -0.2534686661 |
| PubMed_21979375_A2 | Down | -0.3749831975 |
| GSE35957 | Down | -0.1479979911 |
| GSE36640 | Down | -0.5508383395 |
| GSE54402 | Up | 0.1491550697 |
| GSE9593 | Down | -0.2793261873 |
| GSE43922 | Down | -0.2488547853 |
| GSE24585 | Up | 0.0959756074 |
| GSE37065 | Down | -0.2869938997 |
| GSE28863_A1 | Up | 0.1892361504 |
| GSE28863_A2 | Down | -0.0876180201 |
| GSE28863_A3 | Down | -0.1173380580 |
| GSE28863_A4 | Up | 0.2131333386 |
| GSE48662 | Down | -0.0241592685 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-320c | MIMAT0005793 | MIRT036176 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039909 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046444 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-182-5p | MIMAT0000259 | MIRT047190 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT048221 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-26a-5p | MIMAT0000082 | MIRT050086 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050982 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
