HCSGD entry for CLIP3
1. General information
| Official gene symbol | CLIP3 |
|---|---|
| Entrez ID | 25999 |
| Gene full name | CAP-GLY domain containing linker protein 3 |
| Other gene symbols | CLIPR-59 CLIPR59 RSNL1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001934 | Positive regulation of protein phosphorylation | IEA ISS | biological_process |
| GO:0005795 | Golgi stack | IEA | cellular_component |
| GO:0005802 | Trans-Golgi network | IEA ISS | cellular_component |
| GO:0005886 | Plasma membrane | IDA IEA IMP | cellular_component |
| GO:0008017 | Microtubule binding | IDA IMP | molecular_function |
| GO:0010828 | Positive regulation of glucose transport | IEA ISS | biological_process |
| GO:0018230 | Peptidyl-L-cysteine S-palmitoylation | IMP | biological_process |
| GO:0031115 | Negative regulation of microtubule polymerization | IMP | biological_process |
| GO:0031901 | Early endosome membrane | IDA | cellular_component |
| GO:0032588 | Trans-Golgi network membrane | IDA IMP | cellular_component |
| GO:0035594 | Ganglioside binding | IDA | molecular_function |
| GO:0043065 | Positive regulation of apoptotic process | IMP | biological_process |
| GO:0044091 | Membrane biogenesis | IMP | biological_process |
| GO:0045121 | Membrane raft | IDA | cellular_component |
| GO:0045444 | Fat cell differentiation | IEA ISS | biological_process |
| GO:0045807 | Positive regulation of endocytosis | IMP | biological_process |
| GO:0055038 | Recycling endosome membrane | IDA | cellular_component |
| GO:0072321 | Chaperone-mediated protein transport | IMP | biological_process |
| GO:0090004 | Positive regulation of establishment of protein localization to plasma membrane | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0336989552 | 0.1366382926 | 0.4225775131 | 0.7121696040 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0888439116 |
| GSE13712_SHEAR | Down | -1.5661049484 |
| GSE13712_STATIC | Down | -0.5270251873 |
| GSE19018 | Up | 0.5064241189 |
| GSE19899_A1 | Down | -0.4587347686 |
| GSE19899_A2 | Down | -0.4076394091 |
| PubMed_21979375_A1 | Down | -0.8326024600 |
| PubMed_21979375_A2 | Up | 0.5122709804 |
| GSE35957 | Up | 0.0305184780 |
| GSE36640 | Up | 1.6844237514 |
| GSE54402 | Down | -0.0562857180 |
| GSE9593 | Up | 0.7318867738 |
| GSE43922 | Down | -0.8326084211 |
| GSE24585 | Up | 0.8298167087 |
| GSE37065 | Down | -0.4322961815 |
| GSE28863_A1 | Up | 0.5150983983 |
| GSE28863_A2 | Up | 0.3356631891 |
| GSE28863_A3 | Up | 0.2320463779 |
| GSE28863_A4 | Up | 0.1655037026 |
| GSE48662 | Up | 0.3477142234 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018271 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
