HCSGD entry for TSKU
1. General information
| Official gene symbol | TSKU |
|---|---|
| Entrez ID | 25987 |
| Gene full name | tsukushi, small leucine rich proteoglycan |
| Other gene symbols | E2IG4 LRRC54 TSK |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005615 | Extracellular space | IEA | cellular_component |
| GO:0010468 | Regulation of gene expression | IEA | biological_process |
| GO:0021540 | Corpus callosum morphogenesis | IEA | biological_process |
| GO:0021670 | Lateral ventricle development | IEA | biological_process |
| GO:0021960 | Anterior commissure morphogenesis | IEA | biological_process |
| GO:0030178 | Negative regulation of Wnt signaling pathway | IEA | biological_process |
| GO:0061073 | Ciliary body morphogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0807594582 | 0.2179279853 | 0.5987801972 | 0.8986336257 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1095346944 |
| GSE13712_SHEAR | Down | -0.3711495004 |
| GSE13712_STATIC | Down | -0.0577170851 |
| GSE19018 | Down | -0.0881458780 |
| GSE19899_A1 | Down | -0.0044201875 |
| GSE19899_A2 | Up | 0.8556094292 |
| PubMed_21979375_A1 | Up | 0.7522740667 |
| PubMed_21979375_A2 | Up | 1.1109518007 |
| GSE35957 | Down | -0.7463243145 |
| GSE36640 | Down | -0.9754074294 |
| GSE54402 | Down | -0.4428514466 |
| GSE9593 | Down | -0.6545634289 |
| GSE43922 | Up | 0.8428215352 |
| GSE24585 | Down | -0.1512392178 |
| GSE37065 | Up | 0.3952254629 |
| GSE28863_A1 | Up | 0.3532146675 |
| GSE28863_A2 | Up | 0.2214367895 |
| GSE28863_A3 | Down | -0.0514901650 |
| GSE28863_A4 | Down | -0.0641727262 |
| GSE48662 | Up | 0.5056824078 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT004908 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT004908 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025821 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029592 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-769-5p | MIMAT0003886 | MIRT039200 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT048164 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
