HCSGD entry for SYF2
1. General information
| Official gene symbol | SYF2 |
|---|---|
| Entrez ID | 25949 |
| Gene full name | SYF2 homolog, RNA splicing factor (S. cerevisiae) |
| Other gene symbols | CBPIN NTC31 P29 fSAP29 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IC | biological_process |
| GO:0001701 | In utero embryonic development | IEA | biological_process |
| GO:0005634 | Nucleus | IDA NAS | cellular_component |
| GO:0007369 | Gastrulation | IEA | biological_process |
| GO:0048568 | Embryonic organ development | IEA | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0455889936 | 0.9789207439 | 0.4741003161 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3610732431 |
| GSE13712_SHEAR | Down | -0.0330764917 |
| GSE13712_STATIC | Down | -0.2267617983 |
| GSE19018 | Up | 0.1420410061 |
| GSE19899_A1 | Up | 0.2423790859 |
| GSE19899_A2 | Up | 0.4913833846 |
| PubMed_21979375_A1 | Up | 0.4908205096 |
| PubMed_21979375_A2 | Up | 0.3421960781 |
| GSE35957 | Up | 0.0338641035 |
| GSE36640 | Up | 0.2618579087 |
| GSE54402 | Up | 0.4091808174 |
| GSE9593 | Up | 0.1339773981 |
| GSE43922 | Up | 0.2320205497 |
| GSE24585 | Down | -0.0597901372 |
| GSE37065 | Up | 0.1884795738 |
| GSE28863_A1 | Up | 0.2763403188 |
| GSE28863_A2 | Up | 0.3855866101 |
| GSE28863_A3 | Up | 0.2928556613 |
| GSE28863_A4 | Down | -0.1271103106 |
| GSE48662 | Down | -0.3138426403 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031481 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-320a | MIMAT0000510 | MIRT044386 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
