HCSGD entry for CNOT10
1. General information
| Official gene symbol | CNOT10 |
|---|---|
| Entrez ID | 25904 |
| Gene full name | CCR4-NOT transcription complex, subunit 10 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000288 | Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | TAS | biological_process |
| GO:0000289 | Nuclear-transcribed mRNA poly(A) tail shortening | TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006417 | Regulation of translation | IEA | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0030014 | CCR4-NOT complex | IDA | cellular_component |
| GO:0031047 | Gene silencing by RNA | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9305772577 | 0.0776837468 | 0.9999902473 | 0.5275319659 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1679720535 |
| GSE13712_SHEAR | Down | -0.1740903198 |
| GSE13712_STATIC | Down | -0.0333949053 |
| GSE19018 | Down | -0.2358467420 |
| GSE19899_A1 | Down | 0.0000000000 |
| GSE19899_A2 | Down | -1.0205341521 |
| PubMed_21979375_A1 | Down | -0.0052525105 |
| PubMed_21979375_A2 | Down | -0.0502851879 |
| GSE35957 | Down | -0.9395445901 |
| GSE36640 | Down | -1.0259658400 |
| GSE54402 | Up | 0.1476409556 |
| GSE9593 | Down | -0.1564437685 |
| GSE43922 | Up | 0.0522986181 |
| GSE24585 | Down | -0.1707722355 |
| GSE37065 | Up | 0.0855409035 |
| GSE28863_A1 | Up | 0.1029284785 |
| GSE28863_A2 | Down | -0.0466153842 |
| GSE28863_A3 | Down | -0.2762746171 |
| GSE28863_A4 | Down | -0.2192716737 |
| GSE48662 | Down | -0.0142351905 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020673 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039734 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
