HCSGD entry for DFNB31
1. General information
| Official gene symbol | DFNB31 |
|---|---|
| Entrez ID | 25861 |
| Gene full name | deafness, autosomal recessive 31 |
| Other gene symbols | CIP98 USH2D WHRN WI |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001895 | Retina homeostasis | IMP | biological_process |
| GO:0002142 | Stereocilia ankle link complex | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005884 | Actin filament | IEA | cellular_component |
| GO:0005929 | Cilium | IEA | cellular_component |
| GO:0007605 | Sensory perception of sound | IMP | biological_process |
| GO:0030426 | Growth cone | IEA | cellular_component |
| GO:0032420 | Stereocilium | ISS | cellular_component |
| GO:0050953 | Sensory perception of light stimulus | IMP | biological_process |
| GO:0060122 | Inner ear receptor stereocilium organization | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1222703317 | 0.9651459481 | 0.7150138636 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1681562706 |
| GSE13712_SHEAR | Up | 0.0113703889 |
| GSE13712_STATIC | Up | 0.1481723213 |
| GSE19018 | Up | 0.0137599455 |
| GSE19899_A1 | Down | -0.0449199541 |
| GSE19899_A2 | Up | 0.1356792554 |
| PubMed_21979375_A1 | Up | 0.3953477179 |
| PubMed_21979375_A2 | Up | 0.4374074159 |
| GSE35957 | Up | 0.0569234126 |
| GSE36640 | Up | 0.1531803465 |
| GSE54402 | Up | 0.4639302263 |
| GSE9593 | Up | 0.0530028148 |
| GSE43922 | Up | 0.2745857122 |
| GSE24585 | Up | 0.1422910458 |
| GSE37065 | Up | 0.1728219681 |
| GSE28863_A1 | Down | -0.1386022864 |
| GSE28863_A2 | Down | -0.0191626122 |
| GSE28863_A3 | Up | 0.3479875937 |
| GSE28863_A4 | Down | -0.0258640727 |
| GSE48662 | Up | 0.0401048408 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018982 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
