HCSGD entry for SHPRH
1. General information
| Official gene symbol | SHPRH |
|---|---|
| Entrez ID | 257218 |
| Gene full name | SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase |
| Other gene symbols | bA545I5.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000786 | Nucleosome | IEA | cellular_component |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0004386 | Helicase activity | IEA | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006281 | DNA repair | IEA | biological_process |
| GO:0006334 | Nucleosome assembly | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
| GO:0016874 | Ligase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6695899852 | 0.0417376391 | 0.9999902473 | 0.3842519762 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4408209139 |
| GSE13712_SHEAR | Up | 0.1606026347 |
| GSE13712_STATIC | Up | 0.2772238950 |
| GSE19018 | Down | -0.0578272420 |
| GSE19899_A1 | Up | 0.0808073607 |
| GSE19899_A2 | Down | -0.1867161313 |
| PubMed_21979375_A1 | Up | 0.1543855159 |
| PubMed_21979375_A2 | Down | -0.2307155803 |
| GSE35957 | Down | -0.1567778218 |
| GSE36640 | Down | -0.0470158078 |
| GSE54402 | Down | -0.3429196791 |
| GSE9593 | Down | -0.8365663521 |
| GSE43922 | Up | 0.0242030282 |
| GSE24585 | Down | -0.4507795622 |
| GSE37065 | Down | -0.0287833585 |
| GSE28863_A1 | Up | 0.4356078116 |
| GSE28863_A2 | Up | 0.5209843625 |
| GSE28863_A3 | Down | -0.6278433778 |
| GSE28863_A4 | Down | -0.3212061296 |
| GSE48662 | Down | -0.0354383769 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049497 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
