HCSGD entry for RAB38
1. General information
| Official gene symbol | RAB38 |
|---|---|
| Entrez ID | 23682 |
| Gene full name | RAB38, member RAS oncogene family |
| Other gene symbols | NY-MEL-1 rrGTPbp |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003924 | GTPase activity | NAS | molecular_function |
| GO:0005525 | GTP binding | IEA NAS | molecular_function |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0006184 | GTP catabolic process | NAS | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | IEA NAS | biological_process |
| GO:0008152 | Metabolic process | NAS | biological_process |
| GO:0015031 | Protein transport | NAS | biological_process |
| GO:0030670 | Phagocytic vesicle membrane | IEA | cellular_component |
| GO:0042470 | Melanosome | IEA | cellular_component |
| GO:0045335 | Phagocytic vesicle | IDA | cellular_component |
| GO:0060155 | Platelet dense granule organization | IEA | biological_process |
| GO:0090383 | Phagosome acidification | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0534402720 | 0.4690785608 | 0.5053483513 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3983442731 |
| GSE13712_SHEAR | Down | -0.6319003738 |
| GSE13712_STATIC | Down | -0.7350960902 |
| GSE19018 | Down | -0.2127506438 |
| GSE19899_A1 | Up | 0.3423707863 |
| GSE19899_A2 | Up | 0.4702027011 |
| PubMed_21979375_A1 | Up | 1.3198024699 |
| PubMed_21979375_A2 | Down | -0.1235223994 |
| GSE35957 | Down | -0.7701381474 |
| GSE36640 | Down | -0.5598515242 |
| GSE54402 | Up | 1.7033488536 |
| GSE9593 | Down | -0.4167917905 |
| GSE43922 | Up | 0.1315421945 |
| GSE24585 | Up | 0.3456512276 |
| GSE37065 | Up | 0.0858558590 |
| GSE28863_A1 | Down | -0.1205309916 |
| GSE28863_A2 | Up | 0.2014492357 |
| GSE28863_A3 | Up | 0.1073652074 |
| GSE28863_A4 | Up | 0.1895722296 |
| GSE48662 | Down | -0.1050659975 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022901 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032387 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
