HCSGD entry for LSM5
1. General information
| Official gene symbol | LSM5 |
|---|---|
| Entrez ID | 23658 |
| Gene full name | LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| Other gene symbols | YER146W |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000288 | Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | TAS | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0043928 | Exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | TAS | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9919314806 | 0.0028712131 | 0.9999902473 | 0.1073058074 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0098457767 |
| GSE13712_SHEAR | Down | -0.2270755617 |
| GSE13712_STATIC | Down | -0.3445390890 |
| GSE19018 | Down | -0.7474777260 |
| GSE19899_A1 | Down | -0.6206521811 |
| GSE19899_A2 | Down | -1.4738401314 |
| PubMed_21979375_A1 | Down | -0.4422717676 |
| PubMed_21979375_A2 | Down | -1.7682946518 |
| GSE35957 | Down | -0.4740833298 |
| GSE36640 | Down | -1.4920679312 |
| GSE54402 | Down | -0.6324218035 |
| GSE9593 | Down | -0.3197591906 |
| GSE43922 | Down | -0.6402923783 |
| GSE24585 | Down | -0.3195971619 |
| GSE37065 | Up | 0.0356656292 |
| GSE28863_A1 | Down | -0.1141474908 |
| GSE28863_A2 | Up | 0.5066480328 |
| GSE28863_A3 | Up | 0.0675690692 |
| GSE28863_A4 | Down | -0.1273064386 |
| GSE48662 | Down | -0.2326988482 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT051127 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
