HCSGD entry for ZMYND8
1. General information
| Official gene symbol | ZMYND8 |
|---|---|
| Entrez ID | 23613 |
| Gene full name | zinc finger, MYND-type containing 8 |
| Other gene symbols | PRKCBP1 PRO2893 RACK7 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | ISS | biological_process |
| GO:0001106 | RNA polymerase II transcription corepressor activity | ISS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | ISS | cellular_component |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | ISS | biological_process |
| GO:0006366 | Transcription from RNA polymerase II promoter | ISS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016301 | Kinase activity | IEA | molecular_function |
| GO:0070491 | Repressing transcription factor binding | ISS | molecular_function |
| GO:2001141 | Regulation of RNA biosynthetic process | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0585502982 | 0.9646848638 | 0.5247199183 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2774191800 |
| GSE13712_SHEAR | Up | 0.4323793047 |
| GSE13712_STATIC | Up | 0.2096539456 |
| GSE19018 | Down | -0.0252186901 |
| GSE19899_A1 | Up | 0.1819101982 |
| GSE19899_A2 | Up | 0.1479612682 |
| PubMed_21979375_A1 | Up | 0.5568388475 |
| PubMed_21979375_A2 | Up | 0.6367942181 |
| GSE35957 | Down | -0.4038241994 |
| GSE36640 | Down | -0.5004401530 |
| GSE54402 | Up | 0.3220653773 |
| GSE9593 | Up | 0.0495058108 |
| GSE43922 | Up | 0.3189562204 |
| GSE24585 | Up | 0.0313848298 |
| GSE37065 | Up | 0.4958225179 |
| GSE28863_A1 | Down | -0.0267799736 |
| GSE28863_A2 | Down | -0.0741884926 |
| GSE28863_A3 | Up | 0.1587480197 |
| GSE28863_A4 | Up | 0.1754991425 |
| GSE48662 | Up | 0.0983205085 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-548d-5p | MIMAT0004812 | MIRT037778 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-421 | MIMAT0003339 | MIRT039404 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049407 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT050675 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
