HCSGD entry for SNAPIN
1. General information
| Official gene symbol | SNAPIN |
|---|---|
| Entrez ID | 23557 |
| Gene full name | SNAP-associated protein |
| Other gene symbols | BLOC1S7 BLOS7 SNAPAP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0000149 | SNARE binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0007269 | Neurotransmitter secretion | TAS | biological_process |
| GO:0008021 | Synaptic vesicle | TAS | cellular_component |
| GO:0008089 | Anterograde axon cargo transport | ISS | biological_process |
| GO:0016032 | Viral process | IEA | biological_process |
| GO:0016079 | Synaptic vesicle exocytosis | IDA | biological_process |
| GO:0016188 | Synaptic vesicle maturation | IEA | biological_process |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030672 | Synaptic vesicle membrane | IEA | cellular_component |
| GO:0031083 | BLOC-1 complex | IDA | cellular_component |
| GO:0031175 | Neuron projection development | ISS | biological_process |
| GO:0031629 | Synaptic vesicle fusion to presynaptic membrane | IEA | biological_process |
| GO:0032438 | Melanosome organization | NAS | biological_process |
| GO:0043005 | Neuron projection | IEA | cellular_component |
| GO:0045202 | Synapse | IDA | cellular_component |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
| GO:0048490 | Anterograde synaptic vesicle transport | ISS | biological_process |
| GO:0072553 | Terminal button organization | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9842311576 | 0.0111568178 | 0.9999902473 | 0.2087125800 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0968726215 |
| GSE13712_SHEAR | Down | -0.5661771253 |
| GSE13712_STATIC | Down | -0.2061322003 |
| GSE19018 | Up | 0.2745327545 |
| GSE19899_A1 | Down | -0.8665780909 |
| GSE19899_A2 | Down | -0.4063082223 |
| PubMed_21979375_A1 | Down | -1.0201950049 |
| PubMed_21979375_A2 | Down | -0.5814182857 |
| GSE35957 | Down | -0.2665737043 |
| GSE36640 | Down | -0.1492752492 |
| GSE54402 | Down | -0.0936487631 |
| GSE9593 | Up | 0.1377461993 |
| GSE43922 | Down | -0.4884086123 |
| GSE24585 | Up | 0.1614335438 |
| GSE37065 | Down | -0.0081387918 |
| GSE28863_A1 | Down | -0.2402916104 |
| GSE28863_A2 | Up | 0.0367250218 |
| GSE28863_A3 | Down | -0.8956141526 |
| GSE28863_A4 | Down | -0.3180498449 |
| GSE48662 | Down | -0.0379230396 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT005274 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020208 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025889 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT025994 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT028014 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031126 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043762 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
