HCSGD entry for PSD4
1. General information
| Official gene symbol | PSD4 |
|---|---|
| Entrez ID | 23550 |
| Gene full name | pleckstrin and Sec7 domain containing 4 |
| Other gene symbols | EFA6B TIC |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005086 | ARF guanyl-nucleotide exchange factor activity | IBA | molecular_function |
| GO:0005543 | Phospholipid binding | IEA | molecular_function |
| GO:0005802 | Trans-Golgi network | IBA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0016192 | Vesicle-mediated transport | IBA | biological_process |
| GO:0030054 | Cell junction | IBA | cellular_component |
| GO:0030182 | Neuron differentiation | IBA | biological_process |
| GO:0032012 | Regulation of ARF protein signal transduction | IEA | biological_process |
| GO:0043087 | Regulation of GTPase activity | IBA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0667657080 | 0.9805230728 | 0.5562347785 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0079292846 |
| GSE13712_SHEAR | Up | 0.1227292183 |
| GSE13712_STATIC | Down | -0.0067661863 |
| GSE19018 | Up | 0.0283327351 |
| GSE19899_A1 | Up | 0.1479941680 |
| GSE19899_A2 | Up | 0.3922169966 |
| PubMed_21979375_A1 | Up | 0.2823844382 |
| PubMed_21979375_A2 | Up | 0.0337021160 |
| GSE35957 | Down | -0.0104335903 |
| GSE36640 | Up | 0.7087060460 |
| GSE54402 | Up | 0.4460312341 |
| GSE9593 | Up | 0.1086881591 |
| GSE43922 | Up | 0.0806492156 |
| GSE24585 | Up | 0.3866626045 |
| GSE37065 | Up | 0.3389838142 |
| GSE28863_A1 | Down | -0.1592936016 |
| GSE28863_A2 | Down | -0.0374361074 |
| GSE28863_A3 | Up | 0.1390441507 |
| GSE28863_A4 | Up | 0.0497109292 |
| GSE48662 | Up | 0.7458923993 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT023161 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
