HCSGD entry for TNPO3
1. General information
| Official gene symbol | TNPO3 |
|---|---|
| Entrez ID | 23534 |
| Gene full name | transportin 3 |
| Other gene symbols | IPO12 MTR10A TRN-SR TRN-SR2 TRNSR |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004872 | Receptor activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006810 | Transport | IEA | biological_process |
| GO:0035048 | Splicing factor protein import into nucleus | IDA | biological_process |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6496570457 | 0.2293816306 | 0.9999902473 | 0.9218693740 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3995745117 |
| GSE13712_SHEAR | Down | -0.0955184307 |
| GSE13712_STATIC | Up | 0.0216798903 |
| GSE19018 | Down | -0.1349682046 |
| GSE19899_A1 | Down | -0.0173510684 |
| GSE19899_A2 | Down | -0.0236738568 |
| PubMed_21979375_A1 | Up | 0.7367263558 |
| PubMed_21979375_A2 | Up | 0.2660637510 |
| GSE35957 | Down | -0.4655919827 |
| GSE36640 | Down | -0.6335224743 |
| GSE54402 | Up | 0.1728313423 |
| GSE9593 | Up | 0.0089459288 |
| GSE43922 | Down | -0.0531773962 |
| GSE24585 | Down | -0.1405583801 |
| GSE37065 | Down | -0.1063501646 |
| GSE28863_A1 | Up | 0.1124378289 |
| GSE28863_A2 | Up | 0.2836863890 |
| GSE28863_A3 | Down | -0.6852727781 |
| GSE28863_A4 | Down | -0.2588018460 |
| GSE48662 | Up | 0.0320080342 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019682 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025217 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028439 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-24-3p | MIMAT0000080 | MIRT030364 | Microarray | Functional MTI (Weak) | 19748357 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031422 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031422 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042607 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045648 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046428 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050985 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
