HCSGD entry for PHF3
1. General information
| Official gene symbol | PHF3 |
|---|---|
| Entrez ID | 23469 |
| Gene full name | PHD finger protein 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0007275 | Multicellular organismal development | NAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7426629763 | 0.1536556742 | 0.9999902473 | 0.7569475950 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0353694916 |
| GSE13712_SHEAR | Down | -0.1360811417 |
| GSE13712_STATIC | Down | -0.0503088969 |
| GSE19018 | Up | 0.3119689894 |
| GSE19899_A1 | Down | -0.2877573328 |
| GSE19899_A2 | Down | -0.4341978029 |
| PubMed_21979375_A1 | Down | -0.3816680418 |
| PubMed_21979375_A2 | Down | -0.0464460846 |
| GSE35957 | Down | -0.0627951681 |
| GSE36640 | Down | -0.4724652245 |
| GSE54402 | Down | -0.0208366701 |
| GSE9593 | Down | -0.0287819856 |
| GSE43922 | Down | -0.3340164017 |
| GSE24585 | Down | -0.0025449295 |
| GSE37065 | Up | 0.1697767917 |
| GSE28863_A1 | Up | 0.5821105566 |
| GSE28863_A2 | Up | 0.7095581633 |
| GSE28863_A3 | Down | -0.0926029406 |
| GSE28863_A4 | Down | -0.2928878441 |
| GSE48662 | Down | -0.1879515066 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019971 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020337 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027369 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051438 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
