HCSGD entry for ABCB9

1. General information

Official gene symbolABCB9
Entrez ID23457
Gene full nameATP-binding cassette, sub-family B (MDR/TAP), member 9
Other gene symbolsEST122234 TAPL
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001916Positive regulation of T cell mediated cytotoxicityIBAbiological_process
GO:0002474Antigen processing and presentation of peptide antigen via MHC class IIDAbiological_process
GO:0005524ATP bindingIDA IEAmolecular_function
GO:0005743Mitochondrial inner membraneIRDcellular_component
GO:0005765Lysosomal membraneIDAcellular_component
GO:0005769Early endosomeIDAcellular_component
GO:0005783Endoplasmic reticulumIDAcellular_component
GO:0005886Plasma membraneIBAcellular_component
GO:0006200ATP catabolic processIBA IDAbiological_process
GO:0006857Oligopeptide transportIBAbiological_process
GO:0008152Metabolic processIBA IDAbiological_process
GO:0015031Protein transportIEAbiological_process
GO:0015421Oligopeptide-transporting ATPase activityIBAmolecular_function
GO:0015440Peptide-transporting ATPase activityIDAmolecular_function
GO:0015833Peptide transportIDAbiological_process
GO:0016021Integral component of membraneIDA IEAcellular_component
GO:0022891Substrate-specific transmembrane transporter activityIDAmolecular_function
GO:0030176Integral component of endoplasmic reticulum membraneIDAcellular_component
GO:0035672Oligopeptide transmembrane transportIBAbiological_process
GO:0042288MHC class I protein bindingIBAmolecular_function
GO:0042605Peptide antigen bindingIBAmolecular_function
GO:0042626ATPase activity, coupled to transmembrane movement of substancesIEAmolecular_function
GO:0042803Protein homodimerization activityIDA IPImolecular_function
GO:0042825TAP complexIBAcellular_component
GO:0046978TAP1 bindingIBAmolecular_function
GO:0046979TAP2 bindingIBAmolecular_function
GO:0046980Tapasin bindingIBAmolecular_function
GO:0055085Transmembrane transportIBAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.79659556250.38566462520.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0016153105
GSE13712_SHEARDown-0.1120834325
GSE13712_STATICDown-0.0819826337
GSE19018Up0.0137784762
GSE19899_A1Up0.0600007845
GSE19899_A2Up0.1231298803
PubMed_21979375_A1Down-0.4986894309
PubMed_21979375_A2Up0.1679069484
GSE35957Down-0.2781518150
GSE36640Up0.0548060260
GSE54402Down-0.1732307045
GSE9593Up0.1086473251
GSE43922Up0.0520477367
GSE24585Up0.1656675324
GSE37065Down-0.1201894017
GSE28863_A1Down-0.3630624159
GSE28863_A2Down-0.4891098685
GSE28863_A3Up0.1493215302
GSE28863_A4Up0.1783315019
GSE48662Up0.0753605017

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-210-3pMIMAT0000267MIRT003169immunoprecipitaion//Microarray//qRT-PCRFunctional MTI (Weak)19826008
hsa-miR-335-5pMIMAT0000765MIRT018865MicroarrayFunctional MTI (Weak)18185580
hsa-miR-26a-5pMIMAT0000082MIRT050137CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.