HCSGD entry for SPECC1L
1. General information
| Official gene symbol | SPECC1L |
|---|---|
| Entrez ID | 23384 |
| Gene full name | sperm antigen with calponin homology and coiled-coil domains 1-like |
| Other gene symbols | CYTSA OBLFC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005819 | Spindle | IEA | cellular_component |
| GO:0005921 | Gap junction | IEA | cellular_component |
| GO:0007049 | Cell cycle | IEA | biological_process |
| GO:0051301 | Cell division | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8996450781 | 0.0845785722 | 0.9999902473 | 0.5523307711 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.5327768588 |
| GSE13712_SHEAR | Up | 0.1352558164 |
| GSE13712_STATIC | Down | -0.0245611239 |
| GSE19018 | Down | -0.5146955842 |
| GSE19899_A1 | Down | -0.4315326260 |
| GSE19899_A2 | Up | 0.0937753124 |
| PubMed_21979375_A1 | Down | -0.3988948003 |
| PubMed_21979375_A2 | Down | -0.0006107754 |
| GSE35957 | Down | -0.5425948716 |
| GSE36640 | Down | -0.2399568939 |
| GSE54402 | Down | -0.0273175356 |
| GSE9593 | Up | 0.2127630380 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 0.4364883423 |
| GSE28863_A2 | Up | 0.1212300978 |
| GSE28863_A3 | Down | -0.5126686680 |
| GSE28863_A4 | Down | -0.0146161312 |
| GSE48662 | Up | 0.1180424233 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029692 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-1301-3p | MIMAT0005797 | MIRT036003 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-421 | MIMAT0003339 | MIRT039398 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040797 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042319 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-339-5p | MIMAT0000764 | MIRT042765 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045308 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
