HCSGD entry for RPGRIP1L

1. General information

Official gene symbolRPGRIP1L
Entrez ID23322
Gene full nameRPGRIP1-like
Other gene symbolsCORS3 FTM JBTS7 MKS5 NPHP8
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001701In utero embryonic developmentIEAbiological_process
GO:0001822Kidney developmentIEAbiological_process
GO:0001889Liver developmentIEAbiological_process
GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIDAcellular_component
GO:0005813CentrosomeIDAcellular_component
GO:0005911Cell-cell junctionIDAcellular_component
GO:0005923Tight junctionIEAcellular_component
GO:0005929CiliumIDAcellular_component
GO:0005930AxonemeIDAcellular_component
GO:0007163Establishment or maintenance of cell polarityIEAbiological_process
GO:0007368Determination of left/right symmetryIEAbiological_process
GO:0008589Regulation of smoothened signaling pathwayIEAbiological_process
GO:0021532Neural tube patterningIEAbiological_process
GO:0021549Cerebellum developmentIEAbiological_process
GO:0021670Lateral ventricle developmentIEAbiological_process
GO:0021772Olfactory bulb developmentIEAbiological_process
GO:0022038Corpus callosum developmentIEAbiological_process
GO:0031870Thromboxane A2 receptor bindingIPImolecular_function
GO:0035115Embryonic forelimb morphogenesisIEAbiological_process
GO:0035116Embryonic hindlimb morphogenesisIEAbiological_process
GO:0036064Ciliary basal bodyIDAcellular_component
GO:0042384Cilium assemblyIEAbiological_process
GO:0043010Camera-type eye developmentIEAbiological_process
GO:0043584Nose developmentIEAbiological_process
GO:0045744Negative regulation of G-protein coupled receptor protein signaling pathwayIDAbiological_process
GO:0060039Pericardium developmentIEAbiological_process
GO:0060322Head developmentIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.64473597890.08529696060.99999024730.5542134535

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.1739655946
GSE13712_SHEARUp0.0033920327
GSE13712_STATICUp0.1968158405
GSE19018Down-0.1460679536
GSE19899_A1Up0.0172849567
GSE19899_A2Down-0.0189765457
PubMed_21979375_A1Up0.3037367260
PubMed_21979375_A2Down-0.3593205204
GSE35957Down-0.4255920394
GSE36640Down-0.4265115559
GSE54402Up0.4665251985
GSE9593Down-0.2121696878
GSE43922Up0.0982835127
GSE24585Down-0.6298519617
GSE37065Down-0.4022617714
GSE28863_A1Up0.1651986589
GSE28863_A2Down-0.2556433694
GSE28863_A3Down-0.6972282800
GSE28863_A4Up0.1280484830
GSE48662Up0.0422838459

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-375MIMAT0000728MIRT019863MicroarrayFunctional MTI (Weak)20215506
hsa-miR-192-5pMIMAT0000222MIRT026488MicroarrayFunctional MTI (Weak)19074876
hsa-miR-1229-3pMIMAT0005584MIRT036318CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.